Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0639 ATGGCCAAGGACATTGAGGTTGCAGGGCACGGAGACCTCACATTGAAGGACTACCACGACCCACCACCGGCGCCACTGGTCGACCCTGAGGAATTGGGGTCCTGGTCCTTTTACAGGGCCATCATTGCCGAGTTCGTGGCCACCCTTTTGTTCCTCTACGTTACTGTGTTGACGGTGATTGGGTACAAGAACCAGACTGATCCCTACCATCACGGAAATGAATGCAACGGGGTTGGTATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACCGCCGGCATCTCTGGAGGGCATATTAATCCTGCAGTGACGTTCGGGCTATTCCTGGCTAGAAAGGTGTCGCTGGTCCGAGCCGTGATGTACATGGTGGCCCAGTGCGGGGGAGCCATCTGCGGCTGTGGCCTGGTCAAGCTATTCCAGGATATTTACTACATCAGATACGGTGGTGGCGCCAATGAGCTCGCCTCTGGATACAGTATAGGAACGGGGTTGGCTGCTGAGATTATTGGCACCTTCGTTCTTGTCTACACCGTCTTCTCTGCTACTGATCCCAAAAGAAATGCAAGAGATTCCCATGTGCCTGTTTTGGCACCACTCCCCATTGGATTTGCTGTGTTCATGGTTCACTTAGCCACGATCCCCATCACCGGTACCGGAATCAACCCGGCTCGAAGTCTCGGAGCTGCTGTCATCTACAACCAACCCAAAGCCTGGAGTGACCATTGGGTATTTTGGGCTGGACCCTTCATTGGTGCAGCCATTGCAGCATTCTATCACCAGTTCATATTGAGAGCTGGAGCTGTTAAAGCTCTAGGGTCTTTCAAGAGCAGTTCCCACATGTAA 864 0.5266 MAKDIEVAGHGDLTLKDYHDPPPAPLVDPEELGSWSFYRAIIAEFVATLLFLYVTVLTVIGYKNQTDPYHHGNECNGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCGGAICGCGLVKLFQDIYYIRYGGGANELASGYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNQPKAWSDHWVFWAGPFIGAAIAAFYHQFILRAGAVKALGSFKSSSHM* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0639 287 FunFam Probable aquaporin PIP1-2 24 285 - -
Vvi8g0639 287 CDD MIP 39 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g0639 287 Gene3D Glycerol uptake facilitator protein. 24 287 IPR023271 -
Vvi8g0639 287 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 9 276 IPR034294 -
Vvi8g0639 287 ProSitePatterns MIP family signature. 105 113 IPR022357 -
Vvi8g0639 287 SUPERFAMILY Aquaporin-like 32 271 IPR023271 -
Vvi8g0639 287 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g0639 287 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g0639 287 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g0639 287 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g0639 287 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g0639 287 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g0639 287 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vvi8g0639 287 NCBIfam MIP family channel protein 43 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0639 Vvi-Chr8 12986598 12987810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0639 1 287 Major Intrinsic Protein MIP AT3G54820 78.746 2.15e-168 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0639 K09872 - vvi:100233094 568.155