Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0638 ATGCCGCCGAAGTTCGACCCAAGCCAGGTAGTCGACGTCTATGTCAGGGTCACCGGCGGTGAGGTTGGGGCGGCCAGTTCCCTCGCCCCGAAAATCGGTCCCTTGGGTCTCTCCCCTAAGAAGATCGGAGAAGACATAGCCAAGGAGACTGCCAAGGACTGGAAGGGCCTCCGAGTAACGGTGAAGCTCACCGTCCAGAACAGGCAGGCCAAGGTCTCCGTCGTCCCCTCCGCCGCCGCTCTTGTCATCAAAGCTTTAAAAGAGCCGGAGCGCGACCGCAAGAAGACCAAGAACATCAAACATAATGGCAACATCTCCCTCGACGATGTCATCGAGATCGCCAAGATCATGCGGCCAAGATCAATGGCCAAGGACCTGAGCGGCTCAGTGAAGGAGATTCTAGGCACGTGCGTGTCCGTTGGGTGTACGGTCGATGGAAAGGACCCTAAGGATCTGCAGCAGGAGATCGCTGATGGCGATGTTGAGATTCCTCAAGATTGA 501 0.5689 MPPKFDPSQVVDVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKTKNIKHNGNISLDDVIEIAKIMRPRSMAKDLSGSVKEILGTCVSVGCTVDGKDPKDLQQEIADGDVEIPQD* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0638 166 PANTHER 60S RIBOSOMAL PROTEIN L12 1 151 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi8g0638 166 FunFam 60S ribosomal protein L12 1 81 - -
Vvi8g0638 166 Gene3D - 1 81 IPR036796 -
Vvi8g0638 166 Hamap 50S ribosomal protein L11 [rplK]. 9 146 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi8g0638 166 MobiDBLite consensus disorder prediction 145 166 - -
Vvi8g0638 166 ProSitePatterns Ribosomal protein L11 signature. 131 146 IPR020785 GO:0003735|GO:0005840|GO:0006412
Vvi8g0638 166 Gene3D - 82 164 IPR036769 -
Vvi8g0638 166 SUPERFAMILY Ribosomal L11/L12e N-terminal domain 1 87 IPR036796 -
Vvi8g0638 166 SUPERFAMILY Ribosomal protein L11, C-terminal domain 76 149 IPR036769 -
Vvi8g0638 166 FunFam 60S ribosomal protein L12 82 164 - -
Vvi8g0638 166 Pfam Ribosomal protein L11, N-terminal domain 13 69 IPR020784 -
Vvi8g0638 166 Pfam Ribosomal protein L11, RNA binding domain 75 144 IPR020783 GO:0003735|GO:0005840|GO:0006412
Vvi8g0638 166 CDD Ribosomal_L11 13 144 IPR000911 GO:0003735|GO:0005840|GO:0006412
Vvi8g0638 166 SMART rl11c 13 145 IPR000911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0638 Vvi-Chr8 12972420 12972920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0638 1 166 Cytoplasmic Ribosomal Protein Gene Family AT2G37190 89.157 1.73e-108 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0638 K02870 - vvi:100267052 327.02