Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0632 ATGATTCCATTTTTGGGTTCAAAAGAGAAATCAAAGGAGGCGGGGAAGTGTTTAAATCCTCAACTCTGGCATGCTTGTGCCGGAGGAATGGTACAAATGCCTCCTGTGAATAGCAAGGTCTTTTACTTTCCCCAAGGCCATGCTGAGCACGCATGTGCTAGTGTGGATTTCAGGAATTACCCAAGGATTCCGGCATACATACCCTGCAGAGTTTCTGCAATGAAATTCATGGCAGATCCTGAGAGTGATGAGGTTTATGCGAAGATTACTCTGGTTCCGTTGAATGGTAGTGAGAGTGATTATGACGATGATGGATATGGAAATGGAACAGAGTCCCAAGAGAAACCTGCCTCTTTTGCAAAGACATTGACACAATCCGATGCCAATAATGGTGGGGGCTTCTCAGTTCCACGATATTGTGCGGAGACTATATTTCCCCGCTTGGATTACACTGCTGATCCTCCCGTACAAAACATCCTTGCAAAGGATGTGCATGGAGAAACGTGGAAATTTAGGCATATTTACAGAGGGACTCCACGGCGTCATCTATTGACAACGGGATGGAGCACTTTTGTTAACCACAAGAAGCTTATAGCTGGGGATTCAATTGTATTTTTGAGAGCAGAAAATGGGGATCTTTGTGTTGGAATTCGAAGAGCAAAGAGGGGAATTGGATGTGGACCGGAATCATCTTCTGGTTGGAACCCAGCTGGTTGTAACTATGTCATGCCATATGGAGGATTTTCAGCATTCCTGAGGGAAGATGAGAACAAATTGACAAGAAATGGGAATGGTGGCAGTTCAGGCTCCAATGGGAGTTTTTTTGGCAGGGTAAAAGTGACGGCTGAAGCCGTTATTGAAGCTGTGAGACTTGCTGTCAATGGGCAGCCCTTTGAGGTCATCTATTACCCACGAGCTAGCACGCCAGAATTCTGTGTGAAGTCTTCATTGGTGAAGTCAGCATCGCAGATCCGGTGGTGTTCTGGGATGAGGTTCAAAATGGCTTTTGAAACTGAGGATTCTTCACGTATAAGTTGGTTTATGGGGACTATCTCCTCTGTTCAGGTTGCTGATCCCGTCCGCTGGCCTGATTCACCTTGGAGGCTTCTCCAGGTGACATGGGATGAACCAGATCTGCTTCAAAATGTGAAACGCGTCAGCCCATGGCTGGTAGAATTGGTATCCAATATGCCATCCATCCATCTGACCCATTTTTCACCACCGAGAAAGAAGCTGAGATTCCCACAATACCCAGATTTCCCCCTTGATGCCCAATTTTCAATGCCAACGTTTTCCAGCAACCTTGTAGGGCCAAGTAACCCCTTTGGTTGTTTATCCGACAATATTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCAATATGGTTTATCTTTATCTGATCCCCATCACAATAAATTTCAGTCAGGTCTGTTTCCAGCACCTTTCCCACAGCTCGATCATCCTGCCACACCCCCTAAAGCCTCCAATGATTATGTTAGTCGCAAACGTAGCAGCAGTGAAAATGTTTCTTCCTTGTTAACCATTGCACAATCTACAGAGACTTCAAAGAAATCCGATGATAGAAAGACAGGATTTACACTTTTTGGTCGATCAATACTAACTGAGCAACAGATGTCCCAAAGCTGCTCTGGTGATACGGTCTCACCAGTTATTACTGGGAATAGTTCATCAGAAGGGAATCAAGATAAGATGGCAAATTTTTCTGATGGTTCTGGATCTGCACTTCATCAACATGGCCTTCCAGAGCACTCATCCTGTGAAGGGTACCAAACATACAAGGTTAATCACCGTGAAACCGAGCCCAACTTGGAGACTGGTCACTGTAAGGTTTTCATGGAATCTGAGGATGTGGGTCGCACTCTTGATCTTTCATTACTTACATCTTATGATGAATTATGCGGCAAGCTGGCAAAAATGTTTACTATAGAAGATTCTGAGATGCGGAACCATGTGCTCTATAGGGATGCAACTGGTGCAGTCAAACATATCGGCGATGAACCATTTAGTGACTTCACAAAAACAGCGAAAAGGTTGACAATTTTAATGGATTCAAGCAGCGACAATGTAGGAGTGTATAGAAAATAA 2106 0.4478 MIPFLGSKEKSKEAGKCLNPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHACASVDFRNYPRIPAYIPCRVSAMKFMADPESDEVYAKITLVPLNGSESDYDDDGYGNGTESQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLIAGDSIVFLRAENGDLCVGIRRAKRGIGCGPESSSGWNPAGCNYVMPYGGFSAFLREDENKLTRNGNGGSSGSNGSFFGRVKVTAEAVIEAVRLAVNGQPFEVIYYPRASTPEFCVKSSLVKSASQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVADPVRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPSIHLTHFSPPRKKLRFPQYPDFPLDAQFSMPTFSSNLVGPSNPFGCLSDNIPAGMQGARHAQYGLSLSDPHHNKFQSGLFPAPFPQLDHPATPPKASNDYVSRKRSSSENVSSLLTIAQSTETSKKSDDRKTGFTLFGRSILTEQQMSQSCSGDTVSPVITGNSSSEGNQDKMANFSDGSGSALHQHGLPEHSSCEGYQTYKVNHRETEPNLETGHCKVFMESEDVGRTLDLSLLTSYDELCGKLAKMFTIEDSEMRNHVLYRDATGAVKHIGDEPFSDFTKTAKRLTILMDSSSDNVGVYRK* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0632 701 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Vvi8g0632 701 MobiDBLite consensus disorder prediction 545 589 - -
Vvi8g0632 701 SMART B3_2 119 221 IPR003340 GO:0003677
Vvi8g0632 701 Gene3D - 117 221 IPR015300 -
Vvi8g0632 701 ProSiteProfiles PB1 domain profile. 612 695 IPR000270 GO:0005515
Vvi8g0632 701 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Vvi8g0632 701 MobiDBLite consensus disorder prediction 545 580 - -
Vvi8g0632 701 Gene3D - 325 399 - -
Vvi8g0632 701 FunFam Auxin response factor 326 399 - -
Vvi8g0632 701 FunFam Auxin response factor 117 221 - -
Vvi8g0632 701 MobiDBLite consensus disorder prediction 99 118 - -
Vvi8g0632 701 Gene3D - 610 696 - -
Vvi8g0632 701 CDD B3_DNA 118 219 IPR003340 GO:0003677
Vvi8g0632 701 MobiDBLite consensus disorder prediction 480 513 - -
Vvi8g0632 701 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 690 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vvi8g0632 701 Pfam Auxin response factor 288 371 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vvi8g0632 701 SUPERFAMILY DNA-binding pseudobarrel domain 112 222 IPR015300 -
Vvi8g0632 701 MobiDBLite consensus disorder prediction 497 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0632 Vvi-Chr8 12924872 12928620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0632 1 698 B3 DNA Binding Superfamily AT4G30080 57.405 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vvi8g0632 B3 9e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0632 - - vvi:100251645 1420.6