Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0628 ATGAAATATAGGAAGTTGCTTGATTCCTGTGGTTGGGATCATCCTGAATCTCATTGTCTGGTGATGATTCATGCACTGGTATTTATGACATGGTTTTATTTAATGGCAGATAAAATCCCCCAATTGAAGTCACAACAAGGGTCTCCATTCAGCATCATGGCTTCTGGTATTTTAAAATCTGTAAGATTTTATGATGATCTTGAAATAGACAAACCCGCACCATCTGAGAACGGCAGTGACTTGGAGCTCATCGACGAGGCCAATGAGAATCAAATTCATGAGTCATGCTTGAAGAAGGCTGGGGAGAATACATTTGTAAAGCCCTTGCATGAGAGAGAACTTTCCAGAGTCTTCTCTGAGGACTATGAGGTGGTGAAGAAGAAGATATTCGATCCTAGAGGACCTGTCAAAAACCGATGGAACAAAATTTTCTTGGTATCATGTTTGATATCTCTTTTTGTGGACCCTCTGTTTTTCTACTTACCAGGGATGAAGAAAGGCATGTGCATGGATATAAGTCAATCCCTTGAAATAGCCCTCACAGTCGTTAGGTCAACTGTGGATACATTTTACATGATTCAGATTTTTGTTCGATTTAGAACAGCTTATGTTGCTCCTTCCTCTCGTGTATTTGGAAGGGGAGAGCTGGTTATAGACCCTTCAAAGATCGCTTCAAGATACCTGCATAAAGACTTCTGGCTTGATCTTGTAGCTGCTGTGCCTTTTCCACAGATGCTGATCTGGGCGGTAATCCCAAATCTATGGACTTTGAGGACAATCAATTTAAGACTGGTTCTTCACCTCATTATCATTTTTCAGTACCTCCTGAGGCTCTATATCATCTTTCCACTCTCATCTCAAATTGTGAAGACCACAGGGGTGGTGACAGAAACAGCATGGGCAGGAGCAGCCTACAATCTGATTCTCTATATGTTGGCAAGCCATGTCGTAGGATCCTGTTGGTACCTATTGTCGACAGAGAGGCAGGAAGAGTGTTGGAGAAAAGTTTGTAGTCTTCAAGAGTCAGAATGCAACTATTGGTTTCTTGATTGCAACAGTTTGCAAGACCCTCATAGAGCTGCTTGGTTCAAATCAAGCAACATCTCAACTCTGTGTGACCCAAGTGGTGACTTCTTTCAGTTTGGAATTTATGCTGATGCTCTCTCTTCTGGAGTTGCATCCTTGAAGTTCTTCAACAAATTCTTCTACTGCCTCTGGTGGGGCATGAGAAACCTGAGCTCTTTAGGACAGAATCTTTCGACAAGCATGTGCGTTGGAGAAATAAATTTTGCAATTATTATTGCAATTCTTGGATTGGTGCTTTTCGCCCTGCTTATTGGGAATATGCAGACATACCTCCAGTCCACAACTGTGAGACTAGAAGAGTGGAGGATCAGGAAGGCTGATACCGAACAATGGATGCATCACAGGCAGCTACCACGTGAATTAAAGCAGAGCGTTCGAAGGTACAATCAGTATAGATGGGTTGCCACCAGCGGAGTTGATGAGGAAGCTATACTTAAAAGTCTCCCATTGGATCTCCGGCGAGACATCAAGCGCCACCTCTGCCTTGACCTAGTTCTAAGAGTGCCACTCTTTGCTCAGATGGATGAGAGGATGCTAGATGTAATATGTGAAAGACTGAAGCCTGGTCTATGTACTCCAGGCACTTGCCTGGTCCGGGAGGGTGACCCTGTCAGTGAGATGCTCTTCATTGTCAGAGGCCACCTAGATTCTTACACTACCAATGGTGGCCGCACCGGGTTCTTCAATTCTGGCCGCATTGGCCCCACTGACTTCTGTGGCGAGGAGCTGCTGACATGGGCACTGGACCCGCGTCCAGGTGTCATTTTACCGTCCTCTACGCGCACAGTTATGGCCCTCACTGAAGTGGAAGCTTTTGCCCTCATTGCTGATGACCTGAAGTTTGTAGCTTCTCAGTTCCGAAGACTGCACAGCAAGCAGCTGAGGCACACTCTCAGGTTTTACTCCCACCAGTGGAGGACATGGGCTGCATGCTTTATACAAGCGGCTTGGTTTCGCTACAAGAGGCGGAGAGAGGCGTCTGAGCTTAAGGCTAAGGAGAGTTCTGCGGCCTCTGGGCCTGACCAGGGAATCGAGCAAAAGGCAGGCTTAGCAGTCTATGCTGTAAAACTTGCAGCCAGCACTAGGAGGGGTGGATCCGATTTTGACATCCGCCCATTGCAAAAGCCGATGGAGCCTGATTTTACAGTAGACGACAGATAA 2247 0.4593 MKYRKLLDSCGWDHPESHCLVMIHALVFMTWFYLMADKIPQLKSQQGSPFSIMASGILKSVRFYDDLEIDKPAPSENGSDLELIDEANENQIHESCLKKAGENTFVKPLHERELSRVFSEDYEVVKKKIFDPRGPVKNRWNKIFLVSCLISLFVDPLFFYLPGMKKGMCMDISQSLEIALTVVRSTVDTFYMIQIFVRFRTAYVAPSSRVFGRGELVIDPSKIASRYLHKDFWLDLVAAVPFPQMLIWAVIPNLWTLRTINLRLVLHLIIIFQYLLRLYIIFPLSSQIVKTTGVVTETAWAGAAYNLILYMLASHVVGSCWYLLSTERQEECWRKVCSLQESECNYWFLDCNSLQDPHRAAWFKSSNISTLCDPSGDFFQFGIYADALSSGVASLKFFNKFFYCLWWGMRNLSSLGQNLSTSMCVGEINFAIIIAILGLVLFALLIGNMQTYLQSTTVRLEEWRIRKADTEQWMHHRQLPRELKQSVRRYNQYRWVATSGVDEEAILKSLPLDLRRDIKRHLCLDLVLRVPLFAQMDERMLDVICERLKPGLCTPGTCLVREGDPVSEMLFIVRGHLDSYTTNGGRTGFFNSGRIGPTDFCGEELLTWALDPRPGVILPSSTRTVMALTEVEAFALIADDLKFVASQFRRLHSKQLRHTLRFYSHQWRTWAACFIQAAWFRYKRRREASELKAKESSAASGPDQGIEQKAGLAVYAVKLAASTRRGGSDFDIRPLQKPMEPDFTVDDR* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0628 748 PRINTS EAG/ELK/ERG potassium channel family signature 495 502 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi8g0628 748 PRINTS EAG/ELK/ERG potassium channel family signature 445 454 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi8g0628 748 PRINTS EAG/ELK/ERG potassium channel family signature 427 438 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi8g0628 748 PRINTS EAG/ELK/ERG potassium channel family signature 195 204 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi8g0628 748 PRINTS EAG/ELK/ERG potassium channel family signature 401 418 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi8g0628 748 PRINTS EAG/ELK/ERG potassium channel family signature 312 322 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vvi8g0628 748 CDD CAP_ED 532 663 IPR000595 -
Vvi8g0628 748 SUPERFAMILY Voltage-gated potassium channels 131 454 - -
Vvi8g0628 748 SMART cnmp_10 532 663 IPR000595 -
Vvi8g0628 748 SUPERFAMILY cAMP-binding domain-like 462 654 IPR018490 -
Vvi8g0628 748 Pfam Ion transport protein 140 459 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vvi8g0628 748 Gene3D Helix hairpin bin 460 523 - -
Vvi8g0628 748 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 119 743 - -
Vvi8g0628 748 MobiDBLite consensus disorder prediction 724 748 - -
Vvi8g0628 748 Gene3D Jelly Rolls 530 650 IPR014710 -
Vvi8g0628 748 FunFam Cyclic nucleotide-gated ion channel 1 530 648 - -
Vvi8g0628 748 FunFam Cyclic nucleotide-gated ion channel 1 459 523 - -
Vvi8g0628 748 ProSiteProfiles cAMP/cGMP binding motif profile. 532 628 IPR000595 -
Vvi8g0628 748 Gene3D - 144 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0628 Vvi-Chr8 12885463 12889020 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0628 107 746 Ion Channels AT2G28260 68.438 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0628 K05391 - vvi:100244894 1406.35