Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0627 ATGGCTTCTGCTTCTTCCCTGGTTCTTCCCTCTCTTTCCCTCCCCAAAACCCTTGCCATCTCCAAACCCACTTCGGTCTCCTTCTTCTCCCTTCCCTTTTCCTGCTCTTCGCTTAAGCTTCACTCCAACTCCATTTCACTTTCTCCTTCTTCCAGAGGGTTTCTGACCTTGTCGTCTCGGTTCGTCCGAAACGTTGCCGTTTCTTCCGACTACGAGCAAGACGAGGATGTCTTGAGCGATGAGGGTGAGCCCAGTTTCTCCCCTGATCTCAAACTCTTTGTGGGTAACCTCCCCTTCAACGTCGACAGCGCCGGCCTCGCCGGCTTGTTCGAACAAGCCGGAAATGTTGAGATGGTCGAGGTAATTTATGACAAGATAACTGGTAGAAGTAGAGGGTTTGGGTTTGTTACCATGTCCACTGTTGAGGAAGTGGAAGCAGCTGCTCAACAATTCAATGGCTATGAACTTGAGGGGAGGCAATTGAGGGTGAATTCCGGACCTCCTCCTGCTCGAAGGGAAAACAGCAATTTCAGAGGGGAAAACAGCAATTTCAGAGGGGAAAACACCAATTTCAGAGGGCCCAGGGGTGGGGCAAATTTGAATTCTACTAACCGGATTTATGTTGGCAACCTTTCATGGGGTGTTGATGATTTAGCCCTTGAGACCTTGTTTAGTGAGCAAGGAAAGGTTACGGAAGCCAGGGTGATTTATGACAGAGAGACTGGTCGATCAAGGGGTTTTGGATTTGTGACTTACAATTCTGCTGAAGAGGTCAACAGAGCAATTGAATCCTTGGATGGCGTTGACTTGAATGGCAGGTCAATTCGTGTAACCATGGCAGAAGCTAGGCCAAGGAGGCAATTTTGA 867 0.489 MASASSLVLPSLSLPKTLAISKPTSVSFFSLPFSCSSLKLHSNSISLSPSSRGFLTLSSRFVRNVAVSSDYEQDEDVLSDEGEPSFSPDLKLFVGNLPFNVDSAGLAGLFEQAGNVEMVEVIYDKITGRSRGFGFVTMSTVEEVEAAAQQFNGYELEGRQLRVNSGPPPARRENSNFRGENSNFRGENTNFRGPRGGANLNSTNRIYVGNLSWGVDDLALETLFSEQGKVTEARVIYDRETGRSRGFGFVTYNSAEEVNRAIESLDGVDLNGRSIRVTMAEARPRRQF* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0627 288 PANTHER OS02G0815200 PROTEIN 29 286 - -
Vvi8g0627 288 MobiDBLite consensus disorder prediction 169 197 - -
Vvi8g0627 288 SUPERFAMILY RNA-binding domain, RBD 86 197 IPR035979 GO:0003676
Vvi8g0627 288 MobiDBLite consensus disorder prediction 160 197 - -
Vvi8g0627 288 FunFam Ribonucleoprotein A, chloroplastic 67 198 - -
Vvi8g0627 288 CDD RRM2_NsCP33_like 205 280 - -
Vvi8g0627 288 SMART rrm1_1 205 278 IPR000504 GO:0003723
Vvi8g0627 288 SMART rrm1_1 91 164 IPR000504 GO:0003723
Vvi8g0627 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 282 IPR000504 GO:0003723
Vvi8g0627 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 276 IPR000504 GO:0003723
Vvi8g0627 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 162 IPR000504 GO:0003723
Vvi8g0627 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Vvi8g0627 288 Gene3D - 200 288 IPR012677 -
Vvi8g0627 288 Gene3D - 64 199 IPR012677 -
Vvi8g0627 288 SUPERFAMILY RNA-binding domain, RBD 201 287 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0627 Vvi-Chr8 12880267 12881964 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0627 92 287 Eukaryotic Initiation Factors Gene Family AT4G34110 31.122 1.55e-20 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0627 - - vvi:100246501 537.339