Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0622 ATGGAAGCAATGAACAGCCACGGAAGCAACAAGGTCGAGAGTTTCTGCGTGAGTGATCCGCTGAACTGGGGAGTGGCTGCGGAGGAGTTGAAGGGGAGCCATTTGGATGAAGTGAAGCGCATGGTGGCGGAGTACCGGAAGCCGGTGGTTCGGCTGGGTGGTGAGACTCTTACGATATCGCAGGTGGCGGCGATCGCCGGGCGGGAGGAGGATGTGACTGTGGAGTTGTCGGAGGCGGCGAGAGAAGGCGTGAAGGCGAGCAGTGACTGGGTGATGGAGAGCATGAACAAGGGTACTGACAGCTATGGTGTCACCACTGGATTTGGTGCGACTTCACATAGGAGAACCAAAGAAGGTGGTGCCCTTCAGAAGGAGCTTATTAGATTCTTGAATGCTGGAATATTTGGGAACGGAACAGACTCATGCCACACGCTGCCTCACTCAGCAACAAGAGCTGCCATGCTAGTGAGGATCAACACCCTCCTCCAAGGCTACTCCGGCATCAGATTTGAGATCCTGGAAGCCATAACCAAGCTCCTCAACCACAACATCACTCCAAGCTTGCCTCTGCGTGGCACCATCACTGCCTCTGGAGATTTGGTTCCTCTCTCCTACATTGCCGGTCTTCTCACTGGCAGGCCTAATTCCAAAGCTGTTGGACCTACCGGTGAAGTTGTCAATGCTGAAGAGGCCTTTAAAATGGCTGGAATTGAGTCCGGATTTTTTGAGCTGCAGCCCAAGGAAGGCCTGGCTCTTGTTAATGGCACTGCAGTTGGCTCTGGTTTGGCCTCTATGGTGCTTTTCGAGGCCAATGTTCTGGCGGTGTTGTCTGAAGTTTTATCTGCTATTTTCGCTGAAGTGATGCAGGGGAAGCCTGAATTCACTGACCACTTGACTCACAAATTGAAGCACCATCCTGGCCAAATCGAGGCTGCTGCCATTATGGAGCACATTCTAGATGGAAGCTCTTATGTGAAAGAAGCTAAGAAGCTACATGAGATGGATCCCCTGCAGAAGCCAAAGCAAGATCGATATGCTCTAAGGACTTCCCCTCAATGGCTTGGCCCACAGATTGAAGTGATCCGAGCATCAACTAAATCCATTGAGAGGGAGATAAACTCAGTGAACGATAACCCCTTGATTGATGTTTCCAGGAACAAGGCTCTACATGGTGGCAACTTCCAGGGGACCCCAATTGGAGTCTCCATGGACAACACCCGCTTGGCAATTGCAGCCATTGGAAAACTTATGTTTGCTCAGTTCTCAGAGCTTGTCAATGACTTCTACAACAATGGGCTGCCATCAAATCTCTCTGGTGGCCGAAACCCAAGTCTGGATTATGGTTTCAAGGGAGCAGAAATTGCCATGGCTTCCTACTGTTCAGAACTCCAATTTTTGGCCAATCCTGTCACCAACCATGTCCAAAGTGCTGAGCAACACAACCAAGATGTGAACTCCCTGGGCTTAATCTCCTCCAGAAAAACAGCTGAAGCGGTTGATATCTTGAAGCTCATGTCTTCCACATACCTAGTTGCCCTCTGCCAAGCCATTGATTTGAGGCATTTGGAGGAGAATCTGAAGATCACAGTCAAGAACACTATAAGCCACATAGCCAAGAAAACTCTAACCACTGGAGTCAATGGAGAACTCCACCCATCAAGATTCTGCGAGAAGGACTTGCTCAAAGTGGTGGACAGGGAGTATATATTTGCCTACATCGACGACCCCTGCAGTGAAACATATCCACTGATGCAGAAGGTCAGGCAAGTTCTGGTAGAACACGCACTGAACAATGGCGAAAATGAGAAGAATGTCAGCACCTCAATCTTCCAAAAAATAGTGGCATTCGAGGAGGAGTTGAAGGCCCTTTTGCCCAAAGAGGTCGAGAGCACAAGAGCAGGGTTGGAGAGTGGAAACCCATTTATTCCGAACCGAATCAAGGACTGCAGGTCATACCCACTGTACAAGTTCGTGAGAGAGGAGCTGGGAACAGGGCTGCTAACAGGTGAAAAGGTGAGGTCACCAGGGGAGGAGTTCGACAAGGTGTTTACTGCAATGTGTGAGGGGAAGATCATAGACCCTCTTCTGGATTGTCTCAGTGGCTGGAACGGTGCTCCTCTCCCAATCTGTTAG 2133 0.5002 MEAMNSHGSNKVESFCVSDPLNWGVAAEELKGSHLDEVKRMVAEYRKPVVRLGGETLTISQVAAIAGREEDVTVELSEAAREGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKEGGALQKELIRFLNAGIFGNGTDSCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPSLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPTGEVVNAEEAFKMAGIESGFFELQPKEGLALVNGTAVGSGLASMVLFEANVLAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKEAKKLHEMDPLQKPKQDRYALRTSPQWLGPQIEVIRASTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSGGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVDILKLMSSTYLVALCQAIDLRHLEENLKITVKNTISHIAKKTLTTGVNGELHPSRFCEKDLLKVVDREYIFAYIDDPCSETYPLMQKVRQVLVEHALNNGENEKNVSTSIFQKIVAFEEELKALLPKEVESTRAGLESGNPFIPNRIKDCRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKVFTAMCEGKIIDPLLDCLSGWNGAPLPIC* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0622 710 PANTHER HISTIDINE AMMONIA-LYASE 11 710 IPR001106 -
Vvi8g0622 710 Gene3D - 523 644 IPR023144 -
Vvi8g0622 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
Vvi8g0622 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Vvi8g0622 710 CDD PAL-HAL 55 520 IPR001106 -
Vvi8g0622 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841
Vvi8g0622 710 Gene3D - 11 256 IPR024083 -
Vvi8g0622 710 FunFam Phenylalanine ammonia-lyase 10 256 - -
Vvi8g0622 710 Pfam Aromatic amino acid lyase 57 523 IPR001106 -
Vvi8g0622 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824
Vvi8g0622 710 FunFam Phenylalanine ammonia-lyase 257 565 - -
Vvi8g0622 710 NCBIfam phenylalanine ammonia-lyase 19 699 IPR005922 GO:0005737|GO:0006559|GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0622 Vvi-Chr8 12827828 12830404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0622 1 710 Monolignol Biosynthesis Gene Families AT2G37040 83.287 0.0 1246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0622 K10775 - vvi:100241377 1404.42