Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0615 ATGGTACAAGAAGCACCTTCTCTTAAGAAGTATGTGAACATGAAATGCCAAAGGGTTAACGAAGATGAATCTTTTGTTCCTGCTTTGGAAGATGAAGCAATTGAAGTTGAGCATTTACTTGCTGAACCTAAAAATGATAATGTCTCTGTGGATGGTGTTTTGTCTCTAAAGAAGTGCTTGGACATTGAAGATATTCCTGGCAGATTTGAGTGTGGCCTAGAAAGCCATAGTGGTGGGATGGATTCAAATACTACTCGGGAAGGGGAAGACGAGCTAAAACTTGGAGTTTTTGATGGAATGCTGCATGAAGTTGCAGAAGTTGGGGATCTTCATGCAACAAATAGTCTCTCTGGTGCTTGTGAAGATTATCTTTTGGATATTGAATTTGCTGAAACAGTTTCAGAACTGGACAATGGTCCTTGTGCAGGATCACACCTGGGGAACTCAAGTTCTGAGAGTCATTCTCCAGGATTTAGCGGTAGTGATAATGGTGCTGTTGGGATATCAGAATCATCAACAGGAACCATTCCAGTGCCTGAATGTGGGAATAATCTTGACAAGATGACCATTTGTACTTTACATGGCACTTCTAGAAGCAAATGTGAGTGTAAAATGCTTGTTGAGGGCAAGATGGAGCTGCAAGGCTCTGCTTCTTTTAATTTACAGAATCCTGATGGAGTGGATAATGTTTCAAACTTGGTGAGTGGTATACCTTTGGTTGAGAATCGAAAGGACGTGACTTTCACAAATTTGCAATATAACAAGGCTAGTTCAATAGGCCAAGGTATGAAAAAGGAGAGTTTTGCTGGCCGGAAGGGATCAAGAAAGAGATCTGTTGAAGCAAGTGACGTTGGGATGCTTCTTTCGGAGAAGAGGATGCGAAGACCCACTCGGAGGTATATTGAAGAATTTTCAGATCTGAAGTCAAAATCTAACAGGGGTAGGCCAAAAAATTCCACTACTACTACAAAGAATAAGCTTCTAGGGAACAGGCATCGCAGTGAGACTCATCATAAGGGATTTAGTGCAGCACCATTGGTTCCTAGTGGGTCTTATGGTAGATCTAGTGATCGGACACCATTTGAAGTTGGGGTGCAGAAAGGATGTCTAAAGAAGTATGCATCTATCTCGGACCTCGACTCCGATGAGGAATCTTCCCCAGCTGAGTCTGAAGATGACTGTATGACAATAAAGAGACCTGAAACTAGCGGTGATCGAAGGAAGCATCAAAGGCTATGGACTCTTTCCGAGGTGATGAAGTTGGTTGATGGTGTTTCTCACTATGGAGTTGGAAGATGGACTGATATAAAGAGACTTCTTTTCTCATCATCTGCTTACCGGACACCTGTGGATTTGAGGGACAAATGGCGGAATCTTCTAAGAGCTAGCTGTGCCCAATTACAAAGCAAGAGAGAGGTAGAGCAAAAAAGGAAGCATGCCATGCGGCCCTTACCACAGACTCTGCTACACCGTGTTAGCGAACTGGCAATTATTCATCCATACCCAAAGGGGAGCAACTCCAAGCTTCCACATGTTGGCCATGTTACTTCTGCCATGCTTCCGACTACAAGTAAAGATGCTCCTTCCAGCCTGGGTAGGAGACTGGTACCTCGGAAAAACTGTACTTGA 1629 0.434 MVQEAPSLKKYVNMKCQRVNEDESFVPALEDEAIEVEHLLAEPKNDNVSVDGVLSLKKCLDIEDIPGRFECGLESHSGGMDSNTTREGEDELKLGVFDGMLHEVAEVGDLHATNSLSGACEDYLLDIEFAETVSELDNGPCAGSHLGNSSSESHSPGFSGSDNGAVGISESSTGTIPVPECGNNLDKMTICTLHGTSRSKCECKMLVEGKMELQGSASFNLQNPDGVDNVSNLVSGIPLVENRKDVTFTNLQYNKASSIGQGMKKESFAGRKGSRKRSVEASDVGMLLSEKRMRRPTRRYIEEFSDLKSKSNRGRPKNSTTTTKNKLLGNRHRSETHHKGFSAAPLVPSGSYGRSSDRTPFEVGVQKGCLKKYASISDLDSDEESSPAESEDDCMTIKRPETSGDRRKHQRLWTLSEVMKLVDGVSHYGVGRWTDIKRLLFSSSAYRTPVDLRDKWRNLLRASCAQLQSKREVEQKRKHAMRPLPQTLLHRVSELAIIHPYPKGSNSKLPHVGHVTSAMLPTTSKDAPSSLGRRLVPRKNCT* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0615 542 MobiDBLite consensus disorder prediction 144 179 - -
Vvi8g0615 542 Gene3D - 400 507 - -
Vvi8g0615 542 CDD SANT_TRF 413 461 - -
Vvi8g0615 542 SUPERFAMILY Homeodomain-like 407 462 IPR009057 -
Vvi8g0615 542 MobiDBLite consensus disorder prediction 519 542 - -
Vvi8g0615 542 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 6 514 - -
Vvi8g0615 542 MobiDBLite consensus disorder prediction 264 358 - -
Vvi8g0615 542 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 405 464 IPR017930 -
Vvi8g0615 542 MobiDBLite consensus disorder prediction 378 403 - -
Vvi8g0615 542 Pfam Myb-like DNA-binding domain 413 460 IPR001005 -
Vvi8g0615 542 SMART sant 409 462 IPR001005 -
Vvi8g0615 542 MobiDBLite consensus disorder prediction 287 313 - -
Vvi8g0615 542 ProSiteProfiles Myb-like domain profile. 413 460 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0615 Vvi-Chr8 12769010 12785881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0615 411 460 Single Myb Histone (SMH) Gene Family AT1G15720 50.000 4.62e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi8g0615 Myb_DNA-binding 3.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0615 - - vvi:100263609 1056.59