Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0613 ATGAAGAAAGGGTTAAAAGAGTTTTCCTTAAAATCTGAGAATTTATTGGAAAATGAAACAAAGAATTTCAATAACTCGAGTGATATTTCTAATGTAGATGACGTGGACACTGATTCTTATAGTCAGACTGGTAACCCAGCCGTGCTTCCACTCATCACCCAGGTTATCTATAGCCGCCTCTCCAATCTCACCACCATTTTCAATGGGGATATTACTAATAGCTTGGGATTCTGCATAAAGAATGTTGATGCTGATTGGAATGGGGCGTTCAATTTTAGTGGAAATTTGAATTTCTTGACTGATTGTATCCGGCAGACAAAAGGAGACATCACACAGAGGTTATGCACGGCAGCAGAGATGAAGTTCTACTTCAGTAGCTTCTTTGATAGTGCGCCAACGAAAACCAATTATTTAAGACCCAACAAGAACTGTAATTTGACATCATGGGTTTCTGGATGTGAACCAGGGTGGACCTGCTCTGTTGGCATGGATCAGAAGGTTGAACTCAAAAATTCGAAGGACATGCCTTCAAGGACTCGTGACTGTCAACCTTGTTGTGCGGGTTTCTTCTGCCCCCAGGGCCTTACTTGCATGATACCTTGTCCACTAGGTTCTTATTGCCCACTTGGAAAACTTAATAAAACCACTGGCAGATGTGAGCCATACGGCTACCAAATACCACCTGGAAAACCAAATCATACTTGTGGTGGAGCAGATATTTGGGCTGATGTTGAGAGTAGCAGAGATGTATTCTGCTCAGCAGGATCATACTGTCCAACTACCACCGAAAAAGTTCCTTGCAGTGAAGGACATTACTGCCGGACGGGTTCTACATCTGAAAAACGGTGCTTCAAGTTGACCACCTGTAACCCAAGTACTGCAAATCAAAATATTCATGCATATGGGATAATGCTTATAGTTGCACTGAGTACTCTGTTGCTCATTATTTATAATTGTTCTGATCAAGTTCTCACAACTCGAGAAAAAAGACAGGCGAAATCTAGGGAAGCTGCAATAAGAAGTGCACGAGAAACCGCACAAGCGCGTGAAAGGTGGAAATCTGCAAAAGATGTAGCCAAGAAGCGCACACTTGGATTGCAAGCACAGTTATCACGTACATTTTCTCGGGCAAAATCTGTGAAGCAACCAGAACAGAAGGTTCTGGGTCAAGCTAAACCTGGTACAGATGATGCCTTATTACCACCATTGGCTCCTGTTACAGCAACCAATGGTTCAAAAGCAAAGAAAAAGGAACAGAGCAACCTTACAAAAATGTTGCATGCCCTTGAGGATGATCCAGAGAATCCTGAAGGCTTCAATCTAGATATTGGAGATAAACATATTAAAAAGAATATGCCAAAGGGTAAACAAATGCATACTCGCAGCCAAATTTTCAAGTATGCATATGGTCAACTTGAGAAGGAGAAAGCCATGCAGCAGCAGGATAAGAACTTGACCTTCTCAGGGGTTATTTCAATGGCAACAGATGGAGAAATCAGGACCAGACCTGTGATTGAAGTTGCTTTCAAGGACCTAACCCTCACTCTCAAAGGGAAAAATAAACATCTGCTGAGGTGTGTTACTGGGAAAATCATGCCTGGTCGAGTTTCTGCTGTCATGGGCCCTTCGGGGGCTGGGAAAACAACATTTCTTTCTGCTCTGGTAGGAAAAACAACTGGATGCACTAGGACAGGTTCAATTCTTATAAATGGAAAAGATGAATCCATCCACTCATATAAGAAAATTATTGGTTTTGTACCACAAGATGATATAGTGCATGGGAATTTGACAGTAGAGGAGAATCTCCGGTTCAGTGCACGGTGCAGACTATCTGCCAACATGCCAAAGCCAGACAAGGTTCTGGTAGTTGAAAGAGTAATCGAGTCATTGGGATTACAGGCAGTGCGGGATTCCCTGGTTGGGACTGTAGAGAAACGAGGAATTTCTGGAGGCCAGAGGAAACGTGTAAATGTTGGCCTAGAAATGGTCATGGAACCATCATTGTTGATCTTGGATGAGCCTACATCGGGTTTGGACAGTTCATCTTCCAACTTGCTTCTTCGAGCACTTCGCCGTGAAGCTCTAGAAGGGGTAAACATCAGCATGGTTGTTCACCAACCAAGCTATACCTTGTTCAGGATGTTCGATGATTTAATACTTCTAGCCAAAGGTGGTCTTACAGTGTATCATGGATCTGTGAAGAAGGTCGAAGAATACTTTGCAGGCATTGGGATCACTGTACCTGAACGTGTTAACCCTCCAGATCACTTCATTGACATTCTGGAGGGTATAGTGAAACCAAGCTCAGGTGTAACTCATCAGCAGCTTCCCATTAGATGGATGCTTCACAATGGGTATGCAGTGCCCCCAGATATGCTGCAACTTGCCGATGGAATTGCTTCACCCGCAGTGGGTTCAAATCCAAGTGATGCAACAGATTCTAGTGCTCATGGAGGATCTGAACAATCCTTTGCTGGAGATTTGTGGCAGGATGTCAAGTTTAATGTTAGGCTGAAGCATGATAATATACAGCACAATTTCTTAAGGTCCAAGGATTTATCCAACCGAGTAACTGCTGGTGTTCTCCGACAGTATAGATATTTCCTTGGAAGGGTTGGTAAGCAGCGACTACGAGAAGCTAAAATACAAGCAGTAGATTATCTCATCCTGTTACTTGCTGGAGCTTGCTTAGGAACTCTTGCTAAAGTGAGCGATGAAACATTTGGGGCTCTTGGTTATACTTATACCGTCATTGCTGTTTCACTCCTATGTAAGATTGCGGCTTTGAGATCATTTTCTCTGGACAAATTACACTACTGGAGAGAGAGTGCATCTGGCATGAGCAGTCTGGCTTATTTTCTCTCCAAGGATACAATTGACCATTTCAACACAGTCGTCAAACCTTTGGTTTACCTCTCCATGTTCTATTTCTTCAACAATCCTAGATCGTCATTCACAGATAATTACATTGTCTTGCTCTGCCTTGTGTACTGTGTGACTGGCATAGCCTATGTATTTGCAATCTTTCTTGAACCTAGTCCAGCTCAACTGTGGTCAGTGCTTCTTCCTGTAGTTTTGACCCTCATTGCAACACAGGAGAATCAAACTGGAATTGTGAAGCAAATAGGAAAGTTGTGCTATACAAAATATGCTCTGGAAGCTTTTGTTATTGCAAATGCTCAAAGGTTTGATCTAACTAGCTCTTTTCCTAGATGTTCTGGCTGTCTAGTTACTGAATGTTGTTGCAGCTTGTTAGGCATATAA 3264 0.4268 MKKGLKEFSLKSENLLENETKNFNNSSDISNVDDVDTDSYSQTGNPAVLPLITQVIYSRLSNLTTIFNGDITNSLGFCIKNVDADWNGAFNFSGNLNFLTDCIRQTKGDITQRLCTAAEMKFYFSSFFDSAPTKTNYLRPNKNCNLTSWVSGCEPGWTCSVGMDQKVELKNSKDMPSRTRDCQPCCAGFFCPQGLTCMIPCPLGSYCPLGKLNKTTGRCEPYGYQIPPGKPNHTCGGADIWADVESSRDVFCSAGSYCPTTTEKVPCSEGHYCRTGSTSEKRCFKLTTCNPSTANQNIHAYGIMLIVALSTLLLIIYNCSDQVLTTREKRQAKSREAAIRSARETAQARERWKSAKDVAKKRTLGLQAQLSRTFSRAKSVKQPEQKVLGQAKPGTDDALLPPLAPVTATNGSKAKKKEQSNLTKMLHALEDDPENPEGFNLDIGDKHIKKNMPKGKQMHTRSQIFKYAYGQLEKEKAMQQQDKNLTFSGVISMATDGEIRTRPVIEVAFKDLTLTLKGKNKHLLRCVTGKIMPGRVSAVMGPSGAGKTTFLSALVGKTTGCTRTGSILINGKDESIHSYKKIIGFVPQDDIVHGNLTVEENLRFSARCRLSANMPKPDKVLVVERVIESLGLQAVRDSLVGTVEKRGISGGQRKRVNVGLEMVMEPSLLILDEPTSGLDSSSSNLLLRALRREALEGVNISMVVHQPSYTLFRMFDDLILLAKGGLTVYHGSVKKVEEYFAGIGITVPERVNPPDHFIDILEGIVKPSSGVTHQQLPIRWMLHNGYAVPPDMLQLADGIASPAVGSNPSDATDSSAHGGSEQSFAGDLWQDVKFNVRLKHDNIQHNFLRSKDLSNRVTAGVLRQYRYFLGRVGKQRLREAKIQAVDYLILLLAGACLGTLAKVSDETFGALGYTYTVIAVSLLCKIAALRSFSLDKLHYWRESASGMSSLAYFLSKDTIDHFNTVVKPLVYLSMFYFFNNPRSSFTDNYIVLLCLVYCVTGIAYVFAIFLEPSPAQLWSVLLPVVLTLIATQENQTGIVKQIGKLCYTKYALEAFVIANAQRFDLTSSFPRCSGCLVTECCCSLLGI* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0613 1087 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 507 749 IPR003439 GO:0005524
Vvi8g0613 1087 Pfam ABC transporter 527 676 IPR003439 GO:0005524
Vvi8g0613 1087 CDD ABCG_EPDR 505 731 - -
Vvi8g0613 1087 Gene3D - 498 743 IPR027417 -
Vvi8g0613 1087 Pfam ABC-2 type transporter 705 1073 IPR043926 GO:0140359
Vvi8g0613 1087 MobiDBLite consensus disorder prediction 375 419 - -
Vvi8g0613 1087 ProSitePatterns ABC transporters family signature. 648 662 IPR017871 GO:0005524|GO:0016887
Vvi8g0613 1087 SMART AAA_5 533 725 IPR003593 GO:0016887
Vvi8g0613 1087 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 254 1059 - -
Vvi8g0613 1087 FunFam ABC transporter G family member 24 501 743 - -
Vvi8g0613 1087 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 508 741 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0613 Vvi-Chr8 12741119 12755770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0613 534 727 Calmodulin-binding Proteins AT2G36910 28.218 2.76e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0613 - - vvi:100265375 2046.55