LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g0611	ATGGGTTCGGAAATGAATCTCCATAAATTCTCTTCATCGGAGCACTCTAATCCAAACTCCCTCACCACCGCCGCCGCTTCCGCAACAGCCGGCGGCGATTCTACCAAAGCTGAACTGGCCCCCCCTCCTCGGAAAACGGCCTCTTCTTCATCGAGGGATCGTCATACAAAGGTGAACGGCCGAGGCCGCCGAGTCCGCATGCCGGCGCTCTGCGCCGCCCGAATCTTCCAACTCACCCGTGAACTCGGGCACCGCTCCGACGGCGAGACCATCGAGTGGCTGCTCCGACAAGCGGAGCCCTCCATCATAGCCGCTACCGGTACTGGGACGGTCCCGGCGACATCCGTCTCATCCTCCGGCACCGCTAATCCCTCCTCGTCTACGGCCACCACCGCCTGTAAGGTGCAACCGCTTACGTCAGTTCCCAGCGGACATGTGCCAACGGGGATGTTCACTATGGCGCCGCCGAGTTGTCGACTGGACCTGTGCCAGCCGGTGACGTTGGAGTTTCCCGGTAACGGGTACCGGCACATGCCGTTCACATCGTTGTTGTTGCAGTCTGGGACGGAAGAGGCGGAGGAGAGACATCAAGAAGAGGTTCTTCGACAGCAATAA	615	0.6033	MGSEMNLHKFSSSEHSNPNSLTTAAASATAGGDSTKAELAPPPRKTASSSSRDRHTKVNGRGRRVRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTGTVPATSVSSSGTANPSSSTATTACKVQPLTSVPSGHVPTGMFTMAPPSCRLDLCQPVTLEFPGNGYRHMPFTSLLLQSGTEEAEERHQEEVLRQQ*	205

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g0611	204	Pfam	TCP family transcription factor	50	130	IPR017887	-
	Vvi8g0611	204	PANTHER	TRANSCRIPTION FACTOR TCP4-RELATED	15	139	IPR005333	GO:0003700
	Vvi8g0611	204	ProSiteProfiles	TCP domain profile.	51	105	IPR017887	-
	Vvi8g0611	204	MobiDBLite	consensus disorder prediction	1	30	-	-
	Vvi8g0611	204	MobiDBLite	consensus disorder prediction	109	131	-	-
	Vvi8g0611	204	MobiDBLite	consensus disorder prediction	1	64	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g0611	Vvi-Chr8	12723686	12724300	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g0611	51	192	TCP Transcription Factor Family	AT2G37000	56.338	3.42e-47	152

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TCP	Vvi8g0611		TCP	3.4e-30	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g0611	-		-	vvi:100243103	387.111