Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0609 ATGGGATACGCAGCTCCAGAGTACGTCCAAACAGGTCGCCTCACATCCAAGAGTGATGTGTGGAGCTATGGTGTCTTCATTTATGAACTCATCACAGGCAGGCGACCATTTGATAGAAACCGTCCGAAGAGTGAGCAGAAACTCTTGTCATGGGTAAAGCCATTTCTATCGGACATAAAGAAATTCAACCTCATATTGGACCCAAGGCTTGAAGGAAATTACCATCTCAAGTCAGTTCAAAGGCTGGCAATTGTAGCCAACCGCTGCTTGGTAAGAAACCCAAAATCACGCCCAAAGATGAGTGAAGTGTTGGAAATGGTGAATCGAATTGTGGATGCACCAAGGGAAACCGGAAGTCCTCAACCACCGGTAAAGCGTTTGTTATCAATTGAAACTTCTCAGATCACTGAACTCAAAAAGAAGAGAAATATAAAGGATTTGAGAATTGGAGAAGGCGGCTGGTTGCCTTGGAAGTGGACGTCCAGGGTTGTTAGAACATGCTGA 504 0.4504 MGYAAPEYVQTGRLTSKSDVWSYGVFIYELITGRRPFDRNRPKSEQKLLSWVKPFLSDIKKFNLILDPRLEGNYHLKSVQRLAIVANRCLVRNPKSRPKMSEVLEMVNRIVDAPRETGSPQPPVKRLLSIETSQITELKKKRNIKDLRIGEGGWLPWKWTSRVVRTC* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0609 167 ProSiteProfiles Protein kinase domain profile. 1 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0609 167 PANTHER OS01G0588500 PROTEIN-RELATED 2 109 - -
Vvi8g0609 167 Pfam Protein kinase domain 2 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0609 167 Gene3D Transferase(Phosphotransferase) domain 1 1 121 - -
Vvi8g0609 167 SUPERFAMILY Protein kinase-like (PK-like) 2 127 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0609 Vvi-Chr8 12703835 12704338 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0609 2 141 Glycoside Hydrolase AT3G07070 40.136 3.40e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi8g0609 Pkinase 6.9e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0609 - - vvi:100249929 342.813