Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0608 ATGTCTTCATGTAATAGACCACCAAAAACGGAAGTGATGGAAAAGGACATGGCATCGCACACAAGGACTGTTATTTTTTTCATTGTAAGGCAAGTCTTCCTGCAGCTTTTGAGGTCTTTAAGTCTTCTGTGCAGTGGGTTTTTGTTAGAAGTCCTCAATCTTGGGGTTTACCATACGCTGGGGTTTTGGAGAGTTTCTGCAATTGGGTTGACGAGATTAAGTGGGGGAATTGGCATTTTTGATTGTGGGACTATGAAGTGTTTCACATTCTACTATGGTGACAAGAAGGAGGAACCAAAGACCTCAAAGTGGACATCTGTTCAGTCCAACAATTCCACTTTAACTGAGCAAGAGATGAAGAGATTTGCATCTGAACTAAGTTCTCAAAATGTCTCAAATGTTAGCACAGAATCCTTGGCGAGGCCAACATTTCCTAGCCTGTCTCAGAGAGTCAGCAATTTGAGAGTGTTCACATTCTCTGAGCTAAAGAGTGTCACAAAGAATTTTAGCCGCTCCGCCATGATTGGAGAGGGTGGGTTTGGGTGTGTCTATAAGGGCATGATCAAGAGTTCCGATGATCCACCAAGTAAGCTTGATGTTGCTGTAAAACAACTTGGAAAAAGAGGGATGCAGGGGCACAAGGAATGGGTAACAGAAGTGAAGGTTCTTGGAGTGGTAGAGCATCCAAACCTCGTCAAACTGGTGGGCTACTGTGCCGAGGATGATGAAAGAGGAATTCAGCGGCTTCTGATTTATGAATATATGCCTAATGGTAGTGTTGAGAGCCATTTATCAAGTCAATCACAGACACCCCTTTCCTGGGCCATGAGACTGAAAATAGCCCAAGATGCTGCTCAGGGCTTAGCATATCTACACGAAGAAATGGATTTTCAGATCATTTTCAGGGATTTCAAATCCTCCAATATTTTACTGGATGAGGAATGGAATGCAAAGCTGTCAGACTTTGGATTGGCCAGGCTGGGCCCCTCAGAAGGATTAACCCATGTCTCAACAGCGGCAAAAGAGAGAATGTATTAA 1038 0.4364 MSSCNRPPKTEVMEKDMASHTRTVIFFIVRQVFLQLLRSLSLLCSGFLLEVLNLGVYHTLGFWRVSAIGLTRLSGGIGIFDCGTMKCFTFYYGDKKEEPKTSKWTSVQSNNSTLTEQEMKRFASELSSQNVSNVSTESLARPTFPSLSQRVSNLRVFTFSELKSVTKNFSRSAMIGEGGFGCVYKGMIKSSDDPPSKLDVAVKQLGKRGMQGHKEWVTEVKVLGVVEHPNLVKLVGYCAEDDERGIQRLLIYEYMPNGSVESHLSSQSQTPLSWAMRLKIAQDAAQGLAYLHEEMDFQIIFRDFKSSNILLDEEWNAKLSDFGLARLGPSEGLTHVSTAAKERMY* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0608 345 FunFam Os07g0541700 protein 255 341 - -
Vvi8g0608 345 Gene3D Phosphorylase Kinase; domain 1 142 254 - -
Vvi8g0608 345 Pfam Protein tyrosine and serine/threonine kinase 173 330 IPR001245 GO:0004672|GO:0006468
Vvi8g0608 345 Gene3D Transferase(Phosphotransferase) domain 1 255 344 - -
Vvi8g0608 345 ProSiteProfiles Protein kinase domain profile. 169 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0608 345 ProSitePatterns Protein kinases ATP-binding region signature. 175 203 IPR017441 GO:0005524
Vvi8g0608 345 PANTHER OS01G0588500 PROTEIN-RELATED 117 339 - -
Vvi8g0608 345 SUPERFAMILY Protein kinase-like (PK-like) 145 335 IPR011009 -
Vvi8g0608 345 FunFam Serine/threonine-protein kinase BIK1 135 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0608 Vvi-Chr8 12696936 12700710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0608 85 338 Glycoside Hydrolase AT3G07070 42.692 1.29e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi8g0608 PK_Tyr_Ser-Thr 5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0608 - - vri:117920789 577.4