Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g0606 | ATGGCTTCTTCTCCAAGTTGGTCCAAGCTCAGGTTGTTCTTGATGATGTTGCTGTATTCTTTAGACCTGAATGCAGAAGCCTCAGAATTGCAGGCATTGCTCAACTTTAAAACTGGTCTTAGAAACGCAGAAGGGATTGCAGATTGGGGCAAGCAGCCATCACCCTGTGCTTGGACAGGGATTACTTGCAGAAATGGCAGTGTTGTTGCTCTTTCTTTGCCTCGTTTTGGTCTGCAAGGGATGCTTTCTCAGGCACTGATATCCCTATCAAACCTCGAACTTCTTGATCTCTCTGACAATGAATTTTCTGGTCCAATCCCATTACAGTTCTGGAAGCTCAAAAACCTTGAAACCCTCAATCTAAGCTTCAATCTTCTCAATGGAACCTTGTCTGCTCTTCAAAATCTTAAAAACTTGAAAAATCTAAGGCTTGGGTTTAACAGCTTTTCAGGCAAGTTGAACTCTGCGGTCTCCTTTTTCTCAAGCCTTCAAATATTAGATTTGGGTTCGAATCTTTTCACAGGAGAAATCCCTGAGCAGTTATTGCAACTATCTAAATTGCAGGAGCTGATTTTAGGAGGAAATGGATTTTCTGGTCCAATTCCATCATCCATTGGAAACCTTTCGGATCTTCTTGTTCTGGATCTTGCTAATGGCTTCCTCTCTGGTAGCCTCCCCAAGTGTATTGGATCACTGAAAAAATTGCAGGTGTTAGATATTTCCAACAACTCGATCACAGGACCAATTCCCCGTTGTATTGGGGATTTGACTGCACTAAGAGATCTTCGGATTGGAAACAACAGATTTGCAAGTAGAATTCCTCCTGAAATTGGCACTCTCAAAAACCTGGTTAATCTGGAAGCTCCCTCTTGTACTCTCCATGGTCCAATTCCAGAAGAAATAGGCAATCTACAAAGTCTCAAGAAACTTGACCTTTCTGGCAATCAGTTGCAATCACCAATCCCCCAATCCGTTGGGAAGCTGGGGAACCTCACTATTCTTGTCATCAATAATGCAGAACTAAATGGGACCATTCCCCCAGAACTGGGCAATTGCCAGAAGCTAAAGACCGTTATCCTGAGTTTCAATGATTTGCATGGGGTTTTGCCAGATAACCTCAGTGGTTTATCTGAATCAATCATCTCTTTCAGTGCTGAACAGAATCAGCTTGAAGGGCAGATTCCATCTTGGCTTGGCAGGTGGCTCTTTGCTGAGTCTATTCTCTTGGCATCAAATCAGTTCCATGGAAGGATCCCATCACAATTAAGCAATTGTTCATCCCTGTCGTTTCTCAGTCTCAGCCATAATCAATTATCAGGCACCATTCCTTCAGAGCTTTGTAGTTGCAAATTCTTGTCTGGACTTGACCTCGAGAATAATCTCTTCACTGGGTCAATTGAAGATACATTCCAAAACTGTAAAAACCTTTCCCAGCTTGTTCTTGTCCAGAACCAGCTTACTGGAACTATCCCTGCGTATCTATCTGATCTTCCACTTCTAAGTCTTGAACTTGATTGCAACAATTTTTCAGGAGAAATTCCTGATGAGATATGGAACTCAAAGTCCCTACTAGAGCTCAGTGCTGGTTTCAACTTTCTTCAAGGCAGGTTGTCTTCAAAGATTGGCAATCTGGTGACCCTTCAACGCCTTATCTTGAATAATAATAGATTGGAAGGCAGAGTTCCAAAGGAGATCAGAAACTTGGGGAGCTTATCAGTACTCTTCCTAAACCAAAACAAGCTATCAGGCGAAATACCTCCTCAATTATTCCAATTAAGGCTTCTGACAAGCTTGGATCTTGGGTATAATAAATTTACAGGAAGTATTCCATCCAACATTGGGGAGCTGAAAGAGTTGGAGTTCCTGGTACTTGCCCACAACCAACTATCTGGCCCACTTCCCATTGGGATAACAGAGGGTTTCCAGCAATCATCAATTCCAGATACAAGCTATTTACAGCATCGTGGAGTTTTAGATCTCTCCATGAACAAGTTTTCTGGCCAGTTACCTGAAAAGCTTGGAAAGTGCAGTGTGATTGTGGACCTGCTGCTTCAAAATAACAACTTCGCTGGAGAAATCCCAGGATCAATTTTCCAACTCCCGTCTGTCATTTCAATCGATCTTTCGTCAAACCAACTGGAAGGGAAGATACCTACTGAGGTAGGAAAAGCACAAAAGCTTCAAGGTCTGATGCTGGCACACAACAACCTTGAAGGAGGCATTCCTTCGGAGATTGGCAGTCTAAAAGATCTAGTAAAGCTTAATCTATCTGGAAATCAGTTATCTGGTGAAATTCCTGCTTCAATTGGCATGCTACAAAGCCTTTCTGATCTGGATCTAAGCAACAATCATCTGTCTGGTTCAATTCCTTCTTTCTCAGAATTGATCAACCTTGTTGGCCTTTACCTACAACAAAATAGAATATCAGGTAACATTAGTAAACTACTCATGGATAGCTCAATGTGGCACCAAGTTGGCACTTTGAACCTGAGCTTAAACATGTTAAATGGTGAAATTCCAAGCTCTATTGCAAATCTGTCATACCTGACTTCCTTGGATCTGCATAGAAATAGATTCACTGGCAGTATAACCAAATACTTTGGCCATCTCTCACAACTTCAGTACCTGGACATTTCTGAGAACCTCCTCCATGGACCGATTCCACATGAGCTATGTGACCTCGCTGATCTAAGATTCTTGAACATTTCAAACAATATGTTACATGGAGTCTTGGACTGTTCTCAATTTACAGGAAGATCTTTTGTGAACACCAGTGGCCCTTCTGGATCTGCAGAAGTAGAGATCTGCAACATCAGAATCAGTTGGAGAAGATGCTTCCTTGAAAGGCCAGTAATCTTGATATTGTTCTTGAGCACTACCATTTCCATTCTATGGTTAATTGTTGTCTTCTTCCTAAAGAGGAAAGCCATATTTCTGGATAACAGGAAGTTTTGTCCTCAGAGCATGGGAAAGCACACTGATCTCAATTTTAACACAGCTGTCATTTTGAAGCAGTTTCCCCTTCAGCTGACAGTCTCAGAAATTATGCACATCACAAACAATTTCTCCAAAGCCAATGTCATAGGTGATGGAGGATCAGGTACGGTTTACAGAGGGATCCTCCCTAATGGGCAGTTGGTTGCCATCAAGAAGCTTGGGAAGGCAAGAGACAAAGGAAGCAGAGAGTTCCAAGCAGAACTGGATGCAATTGGGAGAGTGAAGCACAAGAATCTGGTTCCGCTGCTGGGATATTGTTCTTCTGGAGATGAAAAACTATTGATATATGAATTCATGGCAAATGGTAGTTTGGATTTCTGGTTAAGAGGTAAGCCTAGAGCTTTGGAAGTGCTGGATTGGACTAGAAGGGTAAAAATAGCAATAGGAACAGCGCAAGGGCTTGCTTTTTTGCACAACATTGTTCCTCCAGTCATTCACAGGGATGTCAAGGCCAGTAACATACTTCTGGATGAAGATTTCCAACCTCGGGTTGCAGATTTTGGACTTGCAAGGATTCTGAAAGTCCATGAAACCCATGTGACCACTGAAATTGCAGGAACATATGGATACATTGCACCAGAATATATTCAAAACTGGAGATCTACAACGAAGGGGGATGTGTACAGTTTTGGAGTGATTATGCTAGAAATGGTCACAGGAAAAGAGCCAACTGGTTTGGGATTTAAGGATGTGGAAGGGGGGAATTTGGTGGGATGGGTCAAGGAGATGGTGGGGAAGGACAAGGGAGTAGAGTGCTTAGATGGGGAAATTTCCAAGGGGACTACATGGGTGGCTCAGATGCTTGAGCTGCTACATCTGGGTGTAGACTGTACCAATGAGGATCCAATGAAGAGGCCTTCCATGCAGGAGGTGGTTCAGTGTCTTGAACATGTTGCAATGAAGAACTAG | 3906 | 0.4263 | MASSPSWSKLRLFLMMLLYSLDLNAEASELQALLNFKTGLRNAEGIADWGKQPSPCAWTGITCRNGSVVALSLPRFGLQGMLSQALISLSNLELLDLSDNEFSGPIPLQFWKLKNLETLNLSFNLLNGTLSALQNLKNLKNLRLGFNSFSGKLNSAVSFFSSLQILDLGSNLFTGEIPEQLLQLSKLQELILGGNGFSGPIPSSIGNLSDLLVLDLANGFLSGSLPKCIGSLKKLQVLDISNNSITGPIPRCIGDLTALRDLRIGNNRFASRIPPEIGTLKNLVNLEAPSCTLHGPIPEEIGNLQSLKKLDLSGNQLQSPIPQSVGKLGNLTILVINNAELNGTIPPELGNCQKLKTVILSFNDLHGVLPDNLSGLSESIISFSAEQNQLEGQIPSWLGRWLFAESILLASNQFHGRIPSQLSNCSSLSFLSLSHNQLSGTIPSELCSCKFLSGLDLENNLFTGSIEDTFQNCKNLSQLVLVQNQLTGTIPAYLSDLPLLSLELDCNNFSGEIPDEIWNSKSLLELSAGFNFLQGRLSSKIGNLVTLQRLILNNNRLEGRVPKEIRNLGSLSVLFLNQNKLSGEIPPQLFQLRLLTSLDLGYNKFTGSIPSNIGELKELEFLVLAHNQLSGPLPIGITEGFQQSSIPDTSYLQHRGVLDLSMNKFSGQLPEKLGKCSVIVDLLLQNNNFAGEIPGSIFQLPSVISIDLSSNQLEGKIPTEVGKAQKLQGLMLAHNNLEGGIPSEIGSLKDLVKLNLSGNQLSGEIPASIGMLQSLSDLDLSNNHLSGSIPSFSELINLVGLYLQQNRISGNISKLLMDSSMWHQVGTLNLSLNMLNGEIPSSIANLSYLTSLDLHRNRFTGSITKYFGHLSQLQYLDISENLLHGPIPHELCDLADLRFLNISNNMLHGVLDCSQFTGRSFVNTSGPSGSAEVEICNIRISWRRCFLERPVILILFLSTTISILWLIVVFFLKRKAIFLDNRKFCPQSMGKHTDLNFNTAVILKQFPLQLTVSEIMHITNNFSKANVIGDGGSGTVYRGILPNGQLVAIKKLGKARDKGSREFQAELDAIGRVKHKNLVPLLGYCSSGDEKLLIYEFMANGSLDFWLRGKPRALEVLDWTRRVKIAIGTAQGLAFLHNIVPPVIHRDVKASNILLDEDFQPRVADFGLARILKVHETHVTTEIAGTYGYIAPEYIQNWRSTTKGDVYSFGVIMLEMVTGKEPTGLGFKDVEGGNLVGWVKEMVGKDKGVECLDGEISKGTTWVAQMLELLHLGVDCTNEDPMKRPSMQEVVQCLEHVAMKN* | 1302 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g0606 | 1301 | SMART | LRR_sd22_2 | 544 | 570 | - | - | |
Vvi8g0606 | 1301 | SMART | LRR_sd22_2 | 748 | 780 | - | - | |
Vvi8g0606 | 1301 | SMART | LRR_sd22_2 | 184 | 210 | - | - | |
Vvi8g0606 | 1301 | SMART | LRR_sd22_2 | 304 | 325 | - | - | |
Vvi8g0606 | 1301 | SMART | LRR_sd22_2 | 89 | 110 | - | - | |
Vvi8g0606 | 1301 | SMART | LRR_sd22_2 | 795 | 814 | - | - | |
Vvi8g0606 | 1301 | SMART | LRR_sd22_2 | 232 | 258 | - | - | |
Vvi8g0606 | 1301 | SMART | LRR_sd22_2 | 113 | 138 | - | - | |
Vvi8g0606 | 1301 | SMART | LRR_sd22_2 | 870 | 896 | - | - | |
Vvi8g0606 | 1301 | FunFam | Leucine-rich repeat receptor-like protein kinase | 1098 | 1301 | - | - | |
Vvi8g0606 | 1301 | SUPERFAMILY | Protein kinase-like (PK-like) | 1002 | 1296 | IPR011009 | - | |
Vvi8g0606 | 1301 | Pfam | Leucine rich repeat N-terminal domain | 28 | 63 | IPR013210 | - | |
Vvi8g0606 | 1301 | SUPERFAMILY | L domain-like | 382 | 634 | - | - | |
Vvi8g0606 | 1301 | PRINTS | Leucine-rich repeat signature | 428 | 441 | - | - | |
Vvi8g0606 | 1301 | PRINTS | Leucine-rich repeat signature | 772 | 785 | - | - | |
Vvi8g0606 | 1301 | SUPERFAMILY | L domain-like | 643 | 912 | - | - | |
Vvi8g0606 | 1301 | Gene3D | Ribonuclease Inhibitor | 179 | 270 | IPR032675 | - | |
Vvi8g0606 | 1301 | Gene3D | Ribonuclease Inhibitor | 535 | 641 | IPR032675 | - | |
Vvi8g0606 | 1301 | Gene3D | Ribonuclease Inhibitor | 449 | 534 | IPR032675 | - | |
Vvi8g0606 | 1301 | Gene3D | Ribonuclease Inhibitor | 271 | 377 | IPR032675 | - | |
Vvi8g0606 | 1301 | Pfam | Leucine Rich Repeat | 306 | 328 | IPR001611 | GO:0005515 | |
Vvi8g0606 | 1301 | FunFam | Leucine-rich repeat receptor protein kinase EMS1 | 717 | 815 | - | - | |
Vvi8g0606 | 1301 | FunFam | Leucine-rich repeat receptor-like protein kinase | 997 | 1097 | - | - | |
Vvi8g0606 | 1301 | ProSiteProfiles | Protein kinase domain profile. | 1022 | 1299 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi8g0606 | 1301 | Pfam | Leucine rich repeat | 213 | 269 | IPR001611 | GO:0005515 | |
Vvi8g0606 | 1301 | Pfam | Leucine rich repeat | 848 | 907 | IPR001611 | GO:0005515 | |
Vvi8g0606 | 1301 | ProSiteProfiles | Leucine-rich repeat profile. | 115 | 137 | IPR001611 | GO:0005515 | |
Vvi8g0606 | 1301 | SUPERFAMILY | L domain-like | 56 | 376 | - | - | |
Vvi8g0606 | 1301 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1098 | 1301 | - | - | |
Vvi8g0606 | 1301 | Gene3D | Phosphorylase Kinase; domain 1 | 986 | 1097 | - | - | |
Vvi8g0606 | 1301 | FunFam | Leucine-rich repeat receptor protein kinase EMS1 | 817 | 914 | - | - | |
Vvi8g0606 | 1301 | ProSitePatterns | Protein kinases ATP-binding region signature. | 1028 | 1051 | IPR017441 | GO:0005524 | |
Vvi8g0606 | 1301 | FunFam | leucine-rich repeat receptor protein kinase EMS1 | 232 | 379 | - | - | |
Vvi8g0606 | 1301 | FunFam | Uncharacterized protein | 457 | 713 | - | - | |
Vvi8g0606 | 1301 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1143 | 1155 | IPR008271 | GO:0004672|GO:0006468 | |
Vvi8g0606 | 1301 | ProSiteProfiles | Leucine-rich repeat profile. | 774 | 796 | IPR001611 | GO:0005515 | |
Vvi8g0606 | 1301 | Gene3D | Ribonuclease Inhibitor | 26 | 178 | IPR032675 | - | |
Vvi8g0606 | 1301 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 822 | 914 | - | - | |
Vvi8g0606 | 1301 | SMART | serkin_6 | 1022 | 1299 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi8g0606 | 1301 | Gene3D | Ribonuclease Inhibitor | 378 | 448 | IPR032675 | - | |
Vvi8g0606 | 1301 | Gene3D | Ribonuclease Inhibitor | 642 | 937 | IPR032675 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 425 | 449 | IPR003591 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 160 | 184 | IPR003591 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 544 | 567 | IPR003591 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 232 | 255 | IPR003591 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 568 | 592 | IPR003591 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 700 | 724 | IPR003591 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 304 | 328 | IPR003591 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 772 | 795 | IPR003591 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 748 | 771 | IPR003591 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 256 | 280 | IPR003591 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 616 | 640 | IPR003591 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 89 | 112 | IPR003591 | - | |
Vvi8g0606 | 1301 | SMART | LRR_typ_2 | 870 | 894 | IPR003591 | - | |
Vvi8g0606 | 1301 | Pfam | Protein kinase domain | 1023 | 1292 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi8g0606 | 1301 | CDD | STKc_IRAK | 1028 | 1295 | - | - | |
Vvi8g0606 | 1301 | FunFam | protein STRUBBELIG-RECEPTOR FAMILY 3 | 26 | 201 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi8g0606 | Vvi-Chr8 | 12682626 | 12686531 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi8g0606 | 27 | 768 | Receptor kinase-like Gene Family | AT5G07280 | 32.371 | 4.96e-87 | 307 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-Xb-1 | Vvi8g0606 | Pkinase | 6.6e-47 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g0606 | - | - | vvi:100256832 | 2472.58 |