Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0606 ATGGCTTCTTCTCCAAGTTGGTCCAAGCTCAGGTTGTTCTTGATGATGTTGCTGTATTCTTTAGACCTGAATGCAGAAGCCTCAGAATTGCAGGCATTGCTCAACTTTAAAACTGGTCTTAGAAACGCAGAAGGGATTGCAGATTGGGGCAAGCAGCCATCACCCTGTGCTTGGACAGGGATTACTTGCAGAAATGGCAGTGTTGTTGCTCTTTCTTTGCCTCGTTTTGGTCTGCAAGGGATGCTTTCTCAGGCACTGATATCCCTATCAAACCTCGAACTTCTTGATCTCTCTGACAATGAATTTTCTGGTCCAATCCCATTACAGTTCTGGAAGCTCAAAAACCTTGAAACCCTCAATCTAAGCTTCAATCTTCTCAATGGAACCTTGTCTGCTCTTCAAAATCTTAAAAACTTGAAAAATCTAAGGCTTGGGTTTAACAGCTTTTCAGGCAAGTTGAACTCTGCGGTCTCCTTTTTCTCAAGCCTTCAAATATTAGATTTGGGTTCGAATCTTTTCACAGGAGAAATCCCTGAGCAGTTATTGCAACTATCTAAATTGCAGGAGCTGATTTTAGGAGGAAATGGATTTTCTGGTCCAATTCCATCATCCATTGGAAACCTTTCGGATCTTCTTGTTCTGGATCTTGCTAATGGCTTCCTCTCTGGTAGCCTCCCCAAGTGTATTGGATCACTGAAAAAATTGCAGGTGTTAGATATTTCCAACAACTCGATCACAGGACCAATTCCCCGTTGTATTGGGGATTTGACTGCACTAAGAGATCTTCGGATTGGAAACAACAGATTTGCAAGTAGAATTCCTCCTGAAATTGGCACTCTCAAAAACCTGGTTAATCTGGAAGCTCCCTCTTGTACTCTCCATGGTCCAATTCCAGAAGAAATAGGCAATCTACAAAGTCTCAAGAAACTTGACCTTTCTGGCAATCAGTTGCAATCACCAATCCCCCAATCCGTTGGGAAGCTGGGGAACCTCACTATTCTTGTCATCAATAATGCAGAACTAAATGGGACCATTCCCCCAGAACTGGGCAATTGCCAGAAGCTAAAGACCGTTATCCTGAGTTTCAATGATTTGCATGGGGTTTTGCCAGATAACCTCAGTGGTTTATCTGAATCAATCATCTCTTTCAGTGCTGAACAGAATCAGCTTGAAGGGCAGATTCCATCTTGGCTTGGCAGGTGGCTCTTTGCTGAGTCTATTCTCTTGGCATCAAATCAGTTCCATGGAAGGATCCCATCACAATTAAGCAATTGTTCATCCCTGTCGTTTCTCAGTCTCAGCCATAATCAATTATCAGGCACCATTCCTTCAGAGCTTTGTAGTTGCAAATTCTTGTCTGGACTTGACCTCGAGAATAATCTCTTCACTGGGTCAATTGAAGATACATTCCAAAACTGTAAAAACCTTTCCCAGCTTGTTCTTGTCCAGAACCAGCTTACTGGAACTATCCCTGCGTATCTATCTGATCTTCCACTTCTAAGTCTTGAACTTGATTGCAACAATTTTTCAGGAGAAATTCCTGATGAGATATGGAACTCAAAGTCCCTACTAGAGCTCAGTGCTGGTTTCAACTTTCTTCAAGGCAGGTTGTCTTCAAAGATTGGCAATCTGGTGACCCTTCAACGCCTTATCTTGAATAATAATAGATTGGAAGGCAGAGTTCCAAAGGAGATCAGAAACTTGGGGAGCTTATCAGTACTCTTCCTAAACCAAAACAAGCTATCAGGCGAAATACCTCCTCAATTATTCCAATTAAGGCTTCTGACAAGCTTGGATCTTGGGTATAATAAATTTACAGGAAGTATTCCATCCAACATTGGGGAGCTGAAAGAGTTGGAGTTCCTGGTACTTGCCCACAACCAACTATCTGGCCCACTTCCCATTGGGATAACAGAGGGTTTCCAGCAATCATCAATTCCAGATACAAGCTATTTACAGCATCGTGGAGTTTTAGATCTCTCCATGAACAAGTTTTCTGGCCAGTTACCTGAAAAGCTTGGAAAGTGCAGTGTGATTGTGGACCTGCTGCTTCAAAATAACAACTTCGCTGGAGAAATCCCAGGATCAATTTTCCAACTCCCGTCTGTCATTTCAATCGATCTTTCGTCAAACCAACTGGAAGGGAAGATACCTACTGAGGTAGGAAAAGCACAAAAGCTTCAAGGTCTGATGCTGGCACACAACAACCTTGAAGGAGGCATTCCTTCGGAGATTGGCAGTCTAAAAGATCTAGTAAAGCTTAATCTATCTGGAAATCAGTTATCTGGTGAAATTCCTGCTTCAATTGGCATGCTACAAAGCCTTTCTGATCTGGATCTAAGCAACAATCATCTGTCTGGTTCAATTCCTTCTTTCTCAGAATTGATCAACCTTGTTGGCCTTTACCTACAACAAAATAGAATATCAGGTAACATTAGTAAACTACTCATGGATAGCTCAATGTGGCACCAAGTTGGCACTTTGAACCTGAGCTTAAACATGTTAAATGGTGAAATTCCAAGCTCTATTGCAAATCTGTCATACCTGACTTCCTTGGATCTGCATAGAAATAGATTCACTGGCAGTATAACCAAATACTTTGGCCATCTCTCACAACTTCAGTACCTGGACATTTCTGAGAACCTCCTCCATGGACCGATTCCACATGAGCTATGTGACCTCGCTGATCTAAGATTCTTGAACATTTCAAACAATATGTTACATGGAGTCTTGGACTGTTCTCAATTTACAGGAAGATCTTTTGTGAACACCAGTGGCCCTTCTGGATCTGCAGAAGTAGAGATCTGCAACATCAGAATCAGTTGGAGAAGATGCTTCCTTGAAAGGCCAGTAATCTTGATATTGTTCTTGAGCACTACCATTTCCATTCTATGGTTAATTGTTGTCTTCTTCCTAAAGAGGAAAGCCATATTTCTGGATAACAGGAAGTTTTGTCCTCAGAGCATGGGAAAGCACACTGATCTCAATTTTAACACAGCTGTCATTTTGAAGCAGTTTCCCCTTCAGCTGACAGTCTCAGAAATTATGCACATCACAAACAATTTCTCCAAAGCCAATGTCATAGGTGATGGAGGATCAGGTACGGTTTACAGAGGGATCCTCCCTAATGGGCAGTTGGTTGCCATCAAGAAGCTTGGGAAGGCAAGAGACAAAGGAAGCAGAGAGTTCCAAGCAGAACTGGATGCAATTGGGAGAGTGAAGCACAAGAATCTGGTTCCGCTGCTGGGATATTGTTCTTCTGGAGATGAAAAACTATTGATATATGAATTCATGGCAAATGGTAGTTTGGATTTCTGGTTAAGAGGTAAGCCTAGAGCTTTGGAAGTGCTGGATTGGACTAGAAGGGTAAAAATAGCAATAGGAACAGCGCAAGGGCTTGCTTTTTTGCACAACATTGTTCCTCCAGTCATTCACAGGGATGTCAAGGCCAGTAACATACTTCTGGATGAAGATTTCCAACCTCGGGTTGCAGATTTTGGACTTGCAAGGATTCTGAAAGTCCATGAAACCCATGTGACCACTGAAATTGCAGGAACATATGGATACATTGCACCAGAATATATTCAAAACTGGAGATCTACAACGAAGGGGGATGTGTACAGTTTTGGAGTGATTATGCTAGAAATGGTCACAGGAAAAGAGCCAACTGGTTTGGGATTTAAGGATGTGGAAGGGGGGAATTTGGTGGGATGGGTCAAGGAGATGGTGGGGAAGGACAAGGGAGTAGAGTGCTTAGATGGGGAAATTTCCAAGGGGACTACATGGGTGGCTCAGATGCTTGAGCTGCTACATCTGGGTGTAGACTGTACCAATGAGGATCCAATGAAGAGGCCTTCCATGCAGGAGGTGGTTCAGTGTCTTGAACATGTTGCAATGAAGAACTAG 3906 0.4263 MASSPSWSKLRLFLMMLLYSLDLNAEASELQALLNFKTGLRNAEGIADWGKQPSPCAWTGITCRNGSVVALSLPRFGLQGMLSQALISLSNLELLDLSDNEFSGPIPLQFWKLKNLETLNLSFNLLNGTLSALQNLKNLKNLRLGFNSFSGKLNSAVSFFSSLQILDLGSNLFTGEIPEQLLQLSKLQELILGGNGFSGPIPSSIGNLSDLLVLDLANGFLSGSLPKCIGSLKKLQVLDISNNSITGPIPRCIGDLTALRDLRIGNNRFASRIPPEIGTLKNLVNLEAPSCTLHGPIPEEIGNLQSLKKLDLSGNQLQSPIPQSVGKLGNLTILVINNAELNGTIPPELGNCQKLKTVILSFNDLHGVLPDNLSGLSESIISFSAEQNQLEGQIPSWLGRWLFAESILLASNQFHGRIPSQLSNCSSLSFLSLSHNQLSGTIPSELCSCKFLSGLDLENNLFTGSIEDTFQNCKNLSQLVLVQNQLTGTIPAYLSDLPLLSLELDCNNFSGEIPDEIWNSKSLLELSAGFNFLQGRLSSKIGNLVTLQRLILNNNRLEGRVPKEIRNLGSLSVLFLNQNKLSGEIPPQLFQLRLLTSLDLGYNKFTGSIPSNIGELKELEFLVLAHNQLSGPLPIGITEGFQQSSIPDTSYLQHRGVLDLSMNKFSGQLPEKLGKCSVIVDLLLQNNNFAGEIPGSIFQLPSVISIDLSSNQLEGKIPTEVGKAQKLQGLMLAHNNLEGGIPSEIGSLKDLVKLNLSGNQLSGEIPASIGMLQSLSDLDLSNNHLSGSIPSFSELINLVGLYLQQNRISGNISKLLMDSSMWHQVGTLNLSLNMLNGEIPSSIANLSYLTSLDLHRNRFTGSITKYFGHLSQLQYLDISENLLHGPIPHELCDLADLRFLNISNNMLHGVLDCSQFTGRSFVNTSGPSGSAEVEICNIRISWRRCFLERPVILILFLSTTISILWLIVVFFLKRKAIFLDNRKFCPQSMGKHTDLNFNTAVILKQFPLQLTVSEIMHITNNFSKANVIGDGGSGTVYRGILPNGQLVAIKKLGKARDKGSREFQAELDAIGRVKHKNLVPLLGYCSSGDEKLLIYEFMANGSLDFWLRGKPRALEVLDWTRRVKIAIGTAQGLAFLHNIVPPVIHRDVKASNILLDEDFQPRVADFGLARILKVHETHVTTEIAGTYGYIAPEYIQNWRSTTKGDVYSFGVIMLEMVTGKEPTGLGFKDVEGGNLVGWVKEMVGKDKGVECLDGEISKGTTWVAQMLELLHLGVDCTNEDPMKRPSMQEVVQCLEHVAMKN* 1302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0606 1301 SMART LRR_sd22_2 544 570 - -
Vvi8g0606 1301 SMART LRR_sd22_2 748 780 - -
Vvi8g0606 1301 SMART LRR_sd22_2 184 210 - -
Vvi8g0606 1301 SMART LRR_sd22_2 304 325 - -
Vvi8g0606 1301 SMART LRR_sd22_2 89 110 - -
Vvi8g0606 1301 SMART LRR_sd22_2 795 814 - -
Vvi8g0606 1301 SMART LRR_sd22_2 232 258 - -
Vvi8g0606 1301 SMART LRR_sd22_2 113 138 - -
Vvi8g0606 1301 SMART LRR_sd22_2 870 896 - -
Vvi8g0606 1301 FunFam Leucine-rich repeat receptor-like protein kinase 1098 1301 - -
Vvi8g0606 1301 SUPERFAMILY Protein kinase-like (PK-like) 1002 1296 IPR011009 -
Vvi8g0606 1301 Pfam Leucine rich repeat N-terminal domain 28 63 IPR013210 -
Vvi8g0606 1301 SUPERFAMILY L domain-like 382 634 - -
Vvi8g0606 1301 PRINTS Leucine-rich repeat signature 428 441 - -
Vvi8g0606 1301 PRINTS Leucine-rich repeat signature 772 785 - -
Vvi8g0606 1301 SUPERFAMILY L domain-like 643 912 - -
Vvi8g0606 1301 Gene3D Ribonuclease Inhibitor 179 270 IPR032675 -
Vvi8g0606 1301 Gene3D Ribonuclease Inhibitor 535 641 IPR032675 -
Vvi8g0606 1301 Gene3D Ribonuclease Inhibitor 449 534 IPR032675 -
Vvi8g0606 1301 Gene3D Ribonuclease Inhibitor 271 377 IPR032675 -
Vvi8g0606 1301 Pfam Leucine Rich Repeat 306 328 IPR001611 GO:0005515
Vvi8g0606 1301 FunFam Leucine-rich repeat receptor protein kinase EMS1 717 815 - -
Vvi8g0606 1301 FunFam Leucine-rich repeat receptor-like protein kinase 997 1097 - -
Vvi8g0606 1301 ProSiteProfiles Protein kinase domain profile. 1022 1299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0606 1301 Pfam Leucine rich repeat 213 269 IPR001611 GO:0005515
Vvi8g0606 1301 Pfam Leucine rich repeat 848 907 IPR001611 GO:0005515
Vvi8g0606 1301 ProSiteProfiles Leucine-rich repeat profile. 115 137 IPR001611 GO:0005515
Vvi8g0606 1301 SUPERFAMILY L domain-like 56 376 - -
Vvi8g0606 1301 Gene3D Transferase(Phosphotransferase) domain 1 1098 1301 - -
Vvi8g0606 1301 Gene3D Phosphorylase Kinase; domain 1 986 1097 - -
Vvi8g0606 1301 FunFam Leucine-rich repeat receptor protein kinase EMS1 817 914 - -
Vvi8g0606 1301 ProSitePatterns Protein kinases ATP-binding region signature. 1028 1051 IPR017441 GO:0005524
Vvi8g0606 1301 FunFam leucine-rich repeat receptor protein kinase EMS1 232 379 - -
Vvi8g0606 1301 FunFam Uncharacterized protein 457 713 - -
Vvi8g0606 1301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1143 1155 IPR008271 GO:0004672|GO:0006468
Vvi8g0606 1301 ProSiteProfiles Leucine-rich repeat profile. 774 796 IPR001611 GO:0005515
Vvi8g0606 1301 Gene3D Ribonuclease Inhibitor 26 178 IPR032675 -
Vvi8g0606 1301 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 822 914 - -
Vvi8g0606 1301 SMART serkin_6 1022 1299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0606 1301 Gene3D Ribonuclease Inhibitor 378 448 IPR032675 -
Vvi8g0606 1301 Gene3D Ribonuclease Inhibitor 642 937 IPR032675 -
Vvi8g0606 1301 SMART LRR_typ_2 425 449 IPR003591 -
Vvi8g0606 1301 SMART LRR_typ_2 160 184 IPR003591 -
Vvi8g0606 1301 SMART LRR_typ_2 544 567 IPR003591 -
Vvi8g0606 1301 SMART LRR_typ_2 232 255 IPR003591 -
Vvi8g0606 1301 SMART LRR_typ_2 568 592 IPR003591 -
Vvi8g0606 1301 SMART LRR_typ_2 700 724 IPR003591 -
Vvi8g0606 1301 SMART LRR_typ_2 304 328 IPR003591 -
Vvi8g0606 1301 SMART LRR_typ_2 772 795 IPR003591 -
Vvi8g0606 1301 SMART LRR_typ_2 748 771 IPR003591 -
Vvi8g0606 1301 SMART LRR_typ_2 256 280 IPR003591 -
Vvi8g0606 1301 SMART LRR_typ_2 616 640 IPR003591 -
Vvi8g0606 1301 SMART LRR_typ_2 89 112 IPR003591 -
Vvi8g0606 1301 SMART LRR_typ_2 870 894 IPR003591 -
Vvi8g0606 1301 Pfam Protein kinase domain 1023 1292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0606 1301 CDD STKc_IRAK 1028 1295 - -
Vvi8g0606 1301 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 26 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0606 Vvi-Chr8 12682626 12686531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0606 27 768 Receptor kinase-like Gene Family AT5G07280 32.371 4.96e-87 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vvi8g0606 Pkinase 6.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0606 - - vvi:100256832 2472.58