Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0602 ATGGCTGACATACAAGGCTCCCCAGGAAGCTCCATGCATGGGGTTACTGGCAGAGAGCAAACCTTTGCCTTCTCAGTGGCTTCTCCAGCTATCCCAACTGATACTACTGCGAAATTTGCCTTACCTGTTGATTCTGAGCACAAAGCCAAGGTCTTCAAGGTCTTCTCCTTTGCCAAGCCGCACATGAGAACTTTCCATCTCTCTTGGGTCTCCTTCTTTACCTGCTTCGTCTCCACTTTTGCTGCTGCTCCACTGGTCCCTGTCATCCGAGATAACCTGAATCTCAGAAAGAGTGACATTGGAAATGCTGGCATAGCTTCAGTTTCCGGGAGTATATTTTCCAGGCTTGTCATGGGCGCCGTGTGTGACCTATTAGGCCCCAGATACGGCTGCGCTTTTCTTATGATGCTATCTGCCCCGGCTGTGTTCTGCATGTCCTTCGTTTCATCCGCCGAGGGGTATATAGCTGTCCGGTTTATGATCGGATTCTCTCTTGCCACATTTGTGTCTTGCCAGTACTGGATGAGCACCATGTTTAACAGCCAGATCATTGGGCTGGTTAATGGCACTGCTGCTGGGTGGGGTAACATGGGTGGTGGTGCTACTCAGCTCCTGATGCCGGTGATTTTTGAGATTATCTGTCGAGTTGGGGTGACCCCATTTATGGCATGGCGGGTTGCCTTCTTCATCCCTGGATGCCTGCATGTGATTATGGGGATATTGGTGTTGAGCTTGGGCCAAGATTTGCCTGATGGAAACCTTGGTACCCTGCAGAAGAAAGGTGATGTTTCCAAAGATAAATTCTCTAAGGTTCTCTGGTATGCCATCACAAATTACAGAACATGGATCTTCGTTCTTCTATATGGCTTCTCACTGGGTGTAGAATTAACCGCCGATAATGTGATCGCCGAGTACTTCTACGACAGGTTTGATCTCAAGCTTCACACAGCCGGAACCATAGCGGCCACGTTTGGGATGGCGAACATAGTGGCTCGACCCATGGGCGGGCTCATGTCAGATCTAGCTGCCCGTCGTTTCGGCATGAGGGGCCGCCTATGGAACCTATGGATCCTCCAAACTCTCGGAGGAGTCTTCTGTATATGCCTGGGCCGAGCTAACTCACTCCCCATCTCCATCTCCTCCATGATCCTCTTCTCCATTGGCGCTCAAGCCGCATGTGGCGCCACCTTTGGAATCATTCCATTCATCTCTCGCCGCTCACTCGGCATTATATCCGGCCTGACCGGTGCAGGTGGGAACTTCGGATCCGGGTTGACCCAGTGGCTGTTTTTCACAAGCTCAAAATACTCCACTGCAACTGGAATCTCATTGATGGGGATCATGATCGTGGCGTGCACACTCCCGGTGGCGCTTGTCCATTTTCCGCAGTGGGGAAGCATGTTGCTACCGCCCTCCAAAGATGCAGTGAGGAGCTGTGAAGAGTACTATTATGGATCCGAGTGGAACGAAGCCGAGAAGCAGAAGGGGTTGCACCAAGGAAGCCTCAAGTTTGCCGAGAACAGCAAGTCGGAGAGGGGCCGCCGTGTTGTCTCTGCACCAACCCCACCCACAGCTACACCGCCGGCGAGCGTGTAG 1596 0.5213 MADIQGSPGSSMHGVTGREQTFAFSVASPAIPTDTTAKFALPVDSEHKAKVFKVFSFAKPHMRTFHLSWVSFFTCFVSTFAAAPLVPVIRDNLNLRKSDIGNAGIASVSGSIFSRLVMGAVCDLLGPRYGCAFLMMLSAPAVFCMSFVSSAEGYIAVRFMIGFSLATFVSCQYWMSTMFNSQIIGLVNGTAAGWGNMGGGATQLLMPVIFEIICRVGVTPFMAWRVAFFIPGCLHVIMGILVLSLGQDLPDGNLGTLQKKGDVSKDKFSKVLWYAITNYRTWIFVLLYGFSLGVELTADNVIAEYFYDRFDLKLHTAGTIAATFGMANIVARPMGGLMSDLAARRFGMRGRLWNLWILQTLGGVFCICLGRANSLPISISSMILFSIGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQWLFFTSSKYSTATGISLMGIMIVACTLPVALVHFPQWGSMLLPPSKDAVRSCEEYYYGSEWNEAEKQKGLHQGSLKFAENSKSERGRRVVSAPTPPTATPPASV* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0602 531 PANTHER HIGH-AFFINITY NITRATE TRANSPORTER 2.3 1 515 IPR044772 GO:0015112
Vvi8g0602 531 MobiDBLite consensus disorder prediction 506 531 - -
Vvi8g0602 531 FunFam Nitrate transporter 2.1 265 466 - -
Vvi8g0602 531 Pfam Major Facilitator Superfamily 69 425 IPR011701 GO:0022857|GO:0055085
Vvi8g0602 531 FunFam High affinity nitrate transporter 57 254 - -
Vvi8g0602 531 Gene3D MFS general substrate transporter like domains 264 465 IPR036259 -
Vvi8g0602 531 CDD MFS_NRT2_like 65 458 IPR044772 GO:0015112
Vvi8g0602 531 Gene3D MFS general substrate transporter like domains 56 253 IPR036259 -
Vvi8g0602 531 SUPERFAMILY MFS general substrate transporter 55 459 IPR036259 -
Vvi8g0602 531 ProSiteProfiles Major facilitator superfamily (MFS) profile. 64 458 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0602 Vvi-Chr8 12658421 12660431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0602 1 523 Inorganic Solute Cotransporters AT5G60770 78.203 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0602 K02575 - vvi:100263699 1034.25