Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0594 ATGATACACAGAGAGAAACAAATGTATCTGCCTATGAGGGAATGCAGAAACCCTCGCTTAATCGTCAGAATCAGGCGTGTGGTGAAGCAGCAGCTTTGGAGGATCCGCTACCTTCTACGGTGGGAGGGGGAAGACGTGGATTGTAATAGCATCAGCAGTGTTGCCGAAGGGGAAAATGTGATGATCAAAGGATATTTTTCAGTGCTAGCAATGGGCAATGGAGAGCCTAAGAAGTTCTTGGTTGCATTGAATTATCTAGCATATCCTCCATTTGTCAAGTTATTAGAAGCAGCAGAACAAGAGTTCGGGTTCGATCAACAGGGTGTTCTAGCCGTACCTTGTGAAGCAAGTGAGCTCCAAAGAATCCTATCGGGTAAAGTAAACTATGATTGA 393 0.4478 MIHREKQMYLPMRECRNPRLIVRIRRVVKQQLWRIRYLLRWEGEDVDCNSISSVAEGENVMIKGYFSVLAMGNGEPKKFLVALNYLAYPPFVKLLEAAEQEFGFDQQGVLAVPCEASELQRILSGKVNYD* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0594 130 Pfam Auxin responsive protein 54 124 IPR003676 GO:0009733
Vvi8g0594 130 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 52 122 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0594 Vvi-Chr8 12552529 12552921 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0594 36 129 Calmodulin-binding Proteins AT3G43120 31.915 1.71e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0594 - K14488 vvi:104880086 251.136