Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0583 ATGGTGACTGGAGGGAGTCATCAAGAAGATGGGGAGAAGAACCCAGCAACCGTTTCTAAGGGAGGAGCTACGAGGTCCTGGGGCACCACGGTTTCGGGCCAGTCAGTGTCTACAAGTGGAAGCGTGGGGTCGCCGTCGAGCCGGAGCGAGGCCGCATTGGCAACACCGGCGAGCGAAAACACTTTTCTTAGATTAAACCATCTTGACATTCACGGTGATGATGCCGGATCTCAAGGGGCCGCTAACAGGAAGAAGAAAAGAGGTCAACGGGCAGTTGGGGGGGATAAGAGTGGTAGGGGACTTCGTCAATTCAGTATGAAAGTTTGTGAGAAAGTGGAAAGCAAGGGAAGGACCACTTATAACGAGGTCGCAGATGAACTGGTAGCTGAATTTGCTGATCCTAGCAATAGTCTTACATCTCCAGATCAGCAACAATATGATGAGAAAAACATAAGGAGGAGAGTATATGATGCCCTGAACGTTCTAATGGCTATGGATATCATATCGAAGGATAAAAAAGAAATACAATGGAAGGGTCTGCCTCGCACTAGTCTAAATGACATTGAAGAATTAAAGACAGACCGCATTGGACTGAGGGGTAGGATTGAGAAGAAAGCTGCCTATTTGCAAGAACTGGAGGAACAATTTGTAGGTCTTCAGAACCTGATACAGCGGAATGAGCAATTATACAGTTCAGGAAATGCTCCCAGCGGGGGTGTGGCCTTGCCTTTTATTCTGGTCCAGGTAGAATTTCTTGGCAAGTTTTCTAGTTGA 774 0.4742 MVTGGSHQEDGEKNPATVSKGGATRSWGTTVSGQSVSTSGSVGSPSSRSEAALATPASENTFLRLNHLDIHGDDAGSQGAANRKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTDRIGLRGRIEKKAAYLQELEEQFVGLQNLIQRNEQLYSSGNAPSGGVALPFILVQVEFLGKFSS* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0583 257 PIRSF Txn_factor_DP 1 251 IPR015648 GO:0005667|GO:0051726
Vvi8g0583 257 SMART E2F_TDP_2 96 179 IPR003316 GO:0005667|GO:0006355
Vvi8g0583 257 MobiDBLite consensus disorder prediction 73 99 - -
Vvi8g0583 257 Gene3D Transcription factor DP 185 250 IPR038168 -
Vvi8g0583 257 FunFam Transcription factor-like protein DPB 91 184 - -
Vvi8g0583 257 PANTHER TRANSCRIPTION FACTOR DP 23 249 IPR015648 GO:0005667|GO:0051726
Vvi8g0583 257 MobiDBLite consensus disorder prediction 19 55 - -
Vvi8g0583 257 Pfam Transcription factor DP 187 249 IPR014889 -
Vvi8g0583 257 SUPERFAMILY E2F-DP heterodimerization region 185 249 IPR037241 -
Vvi8g0583 257 Pfam E2F/DP family winged-helix DNA-binding domain 99 179 IPR003316 GO:0005667|GO:0006355
Vvi8g0583 257 Gene3D - 91 184 IPR036388 -
Vvi8g0583 257 MobiDBLite consensus disorder prediction 1 55 - -
Vvi8g0583 257 SUPERFAMILY "Winged helix" DNA-binding domain 99 180 IPR036390 -
Vvi8g0583 257 Coils Coil 209 229 - -
Vvi8g0583 257 SMART DP_2 186 257 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0583 Vvi-Chr8 12390336 12398746 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0583 97 248 E2F-DP Transcription Factor Family AT5G02470 52.288 3.03e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vvi8g0583 E2F_TDP 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0583 K04683 - vvi:100267128 454.907