Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0582 ATGCAGCTGGTGCATTTCGACTTTAACAGCACCCCTTTTGAGCTCCATGATGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAAAGACCACAGGGTGACGATGTAACACATGATTTCCCTGCTGATGGAGAAGGGTCCAGTATGCCTGGCATGTACCAATCCCTAATCCCTCATTCCTCACGGTCAAGCACACTGGGTAGACCTCCAACCTCCCCACCTCTGCCTGGAATATTAAAAGCACGCGTCAAGCATGAGCACTAA 264 0.4773 MQLVHFDFNSTPFELHDDNYVLKAMKFCERPQGDDVTHDFPADGEGSSMPGMYQSLIPHSSRSSTLGRPPTSPPLPGILKARVKHEH* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0582 87 PANTHER TRANSCRIPTION FACTOR DP 1 58 IPR015648 GO:0005667|GO:0051726
Vvi8g0582 87 MobiDBLite consensus disorder prediction 32 87 - -
Vvi8g0582 87 MobiDBLite consensus disorder prediction 53 68 - -
Vvi8g0582 87 Gene3D Transcription factor DP 1 64 IPR038168 -
Vvi8g0582 87 SMART DP_2 1 85 IPR014889 -
Vvi8g0582 87 Pfam Transcription factor DP 1 56 IPR014889 -
Vvi8g0582 87 SUPERFAMILY E2F-DP heterodimerization region 1 39 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0582 Vvi-Chr8 12363666 12364257 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0582 1 26 E2F-DP Transcription Factor Family AT5G02470 73.077 1.05e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0582 K04683 - vvi:100267128 187.963