LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g0579	ATGCCGTACCTTGTCCGGGAGAATCTATTCATCGGTAACATTAGTGACGCAGCGGAGATTCTCCAGAACGGTAGCGCCGAGATCACGCATATCTTATCGGTTCTCAGTTCCGCCTCGATTTCTTTTTTCTCTGAATGGCGCGCCGGACTTTCTATCCCTACCAAAGAAATTCGCAGAGTCTTCGTTGGTGGGTCTGGTAGTAGTTCAGAATCCGAGGATAAACCGGTCAATGGTTCAAAGAGTTGTTTATCGCCAGAGAAAATTCTCTATTCACTGGAATATGCGGGCAAGGATCTGAAGCTGGTGAGGATGGCGGTCCCATTGAGGGATATGGAGAGTGAGGATTTGTTGGATTATTTGGATGTATGTTTGGATTTCATTGACAAGAGTAGGAAAGAGGGTTCAGTTTTGGTACATTGCTTTGCTGGGGTATCAAGAAGTGCATCTATCATTACAGCATACCTGATGAGAACTGAGCGTCTGTCTCAAGAAGATGCACTTGAGTCCTTACGGCAGAGCTGTGAGTTTGTTTGCCCTAATGATGGTTTTCTGGAACAGTTAAAAATGTATGAAGATATGGGTTTCAAGGTTGATCATGCTAACCCCATATACAAGCGCTTTTGCCTAAAAGTATTAGGTGAACTTTATAATCGTGGAGAGAAAATAGACAGCTCTAAATTTGGGGCAGATCCTGGCATCTCAACAGAACCCATTTCTTCTAAAGTAGAGGCATCTCCAAATGGAGTAATTAATTCAACTGCTGCGTACCGCTGCAAAAAATGCCGAAGAGTTGTTGCATTGCAAGAGAATGTTGTGGATCATGTTCCAGGTGAGGGTGAGACTTCCTTTGAGTGGTACAAGCGGAGAAGTGGCAACCCTTTTGACAAGTCAAGTGAGTTTGAGTGCTCTTCTATCTTTGTTGAGCCTTTACGGTGGATGACAACAGTTGAAGAAGGTGCGTTGGAGGGCAAGCTGACATGTGCTCACTGCGAAGCCCGTTTGGGTTATTTTAATTGGTCAGGGATCCAGTGCAGTTGCGGGAGTTGGGTCACCCCTGCCTTTCAGCTCCATAAAAGCCGAGTTGATATCAGCACCGTCTAA	1101	0.4523	MPYLVRENLFIGNISDAAEILQNGSAEITHILSVLSSASISFFSEWRAGLSIPTKEIRRVFVGGSGSSSESEDKPVNGSKSCLSPEKILYSLEYAGKDLKLVRMAVPLRDMESEDLLDYLDVCLDFIDKSRKEGSVLVHCFAGVSRSASIITAYLMRTERLSQEDALESLRQSCEFVCPNDGFLEQLKMYEDMGFKVDHANPIYKRFCLKVLGELYNRGEKIDSSKFGADPGISTEPISSKVEASPNGVINSTAAYRCKKCRRVVALQENVVDHVPGEGETSFEWYKRRSGNPFDKSSEFECSSIFVEPLRWMTTVEEGALEGKLTCAHCEARLGYFNWSGIQCSCGSWVTPAFQLHKSRVDISTV*	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g0579	366	PANTHER	DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER	1	363	-	-
	Vvi8g0579	366	FunFam	Dual specificity protein phosphatase 12-like	4	213	-	-
	Vvi8g0579	366	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	117	172	IPR000387	GO:0016311\|GO:0016791
	Vvi8g0579	366	Pfam	Dual specificity phosphatase, catalytic domain	99	192	IPR000340	GO:0008138\|GO:0016311
	Vvi8g0579	366	PIRSF	DUSP12	3	45	IPR016278	GO:0006470\|GO:0008138
	Vvi8g0579	366	PIRSF	DUSP12	59	366	IPR016278	GO:0006470\|GO:0008138
	Vvi8g0579	366	SMART	dsp_5	1	193	IPR020422	GO:0006470\|GO:0008138
	Vvi8g0579	366	CDD	DSP_DUSP12	4	198	-	-
	Vvi8g0579	366	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	1	196	IPR020422	GO:0006470\|GO:0008138
	Vvi8g0579	366	Gene3D	Protein tyrosine phosphatase superfamily	4	213	IPR029021	-
	Vvi8g0579	366	ProSitePatterns	Tyrosine specific protein phosphatases active site.	138	148	IPR016130	GO:0016311\|GO:0016791
	Vvi8g0579	366	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	4	196	IPR029021	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g0579	Vvi-Chr8	12312319	12317506	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g0579	101	191	Protein tyrosine phosphatase (PTP) family	AT3G06110	39.130	1.22e-15	72.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g0579	K14819		-	vvi:100256857	714.146