Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0577 ATGGGACTCTGTCAGGGAAAACCCATTGAAAACCCTCAGACACAGTCCCAAGACCTTATAATTCCCGGTGATGGCGAGCTTTCTACCAACACCCAAACCACCAAAACCCCAAAATTCCCCTTTTACAGCCCAAGTCCACTGCCTAGTGGTTTCAAGAACTCGCCAGCCAATTCAAGCGTGAGTTCCACCCCCTTGCGGATCTTTAAGCGGCCGTTTCCGCCACCTTCTCCGGCAAAGCATATTCGGGCATTGCTTGCTCGAAGGCACGGTTCGGTTAAGCCGAATGAGGCCACAATTCCCGAAGGAAACGAGTGTGAAGTTGGTTTGGACAAGAACTTTGGGTTCTCGAAGCAGTTTGTAGCTCACTACGAGATGGGTGAGGAGGTGGGGCGTGGCCATTTTGGGTACACTTCTTCCGCCAAAGCCAAGAAAGGGAGCTTGAAGGGGCAGGATGTTGCTGTCAAGGTTATCGCCAAATCAAAGATGACTACAGCAATTGCTATTGAAGATGTGAGAAGAGAAGTAAAAATATTACGAGCTCTAACTGGACATAAGAACCTAGTGCAATTCTACGAGGCCTACGAAGATGATGATAATGTTTATATAGTAATGGAGTTATGCAGAGGAGGTGAACTTTTAGATAGAATTCTTGCCAGGGGTGGAAAATACTCTGAAGAAGATGCAAAGGCTGTCATGGTCCAGATTTTGAATGTAACTGCCTTCTGTCATCTCCAAGGTGTGGTTCACCGTGACCTTAAGCCAGAGAATTTTCTTTTCATTTCCAAAGAAGAGAATTCTCCACTGAAGGCTATTGATTTCGGACTTTCTGACTACGTAAAGCCAGATGAGAGGCTGAATGATATTGTAGGAAGTGCATATTATGTAGCTCCTGAAGTTCTTCATAGATCATATGGGACCGAAGCTGACATGTGGAGTGTTGGTGTAATTGCTTATATTCTTCTATGTGGAAGTCGGCCCTTTTGGGCCCGGACAGAATCAGGCATCTTCAAAGCTGTCCTTAAGGCAGATCCAAGCTTTGATGAAGCCCCTTGGCCTTCTTTATCTTCTGATGCAATAGATTTTGTAAAGAGATTGTTGAATAAAGATTACCGCAAGAGGCTAACTGCTGCTCAGGCTCTAAGTCATCCATGGCTGGCCAATTATCATGATGTCAAGATACCATTGGATATGATAGTATATAAACTTGTAAAAGCTTATATATTCTCATCTTCTCTGCGAAAATCGGCTTTGGCGGCTCTTGCTAAGACATTGAGTATAGCTCAGCTAGCTTATTTTCGGGAACAATTTACACTTTTGGGGCCGAACAAAAGTGGATTCGTATCTCTGCAGAACTTTAAGACGGCTGTGACAAAGAACTCCACTGATGCCATAAAGGATTCACGGGTCCTGGAATATGTCAGCATGGTGGGTTCTCTTCAATATAGAAAGTTGGACTTTGAAGAATTTTGCGCAGCAGCCATAAGTGTGCTTCAGCTGGAAGGAATGGAGAGCTGGGAGCAACATGCACGGCGTGGGTATGAGCTATTTGAGAAGGATGGAAATAGGCCCATTATGATAGAGGAACTTGCTTCAGAACTTGGACTTAGCCCATCGGTACCTGTTCATGTAGTTCTCCAAGACTGGATAAGACACTCTGATGGGAAGCTTAGCTTCTTAGGGTTTGTTAGACTCTTACATGGTCCGTCTCGTGCATTCCCCAAAGCGTAA 1728 0.4491 MGLCQGKPIENPQTQSQDLIIPGDGELSTNTQTTKTPKFPFYSPSPLPSGFKNSPANSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEATIPEGNECEVGLDKNFGFSKQFVAHYEMGEEVGRGHFGYTSSAKAKKGSLKGQDVAVKVIAKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNVYIVMELCRGGELLDRILARGGKYSEEDAKAVMVQILNVTAFCHLQGVVHRDLKPENFLFISKEENSPLKAIDFGLSDYVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSVGVIAYILLCGSRPFWARTESGIFKAVLKADPSFDEAPWPSLSSDAIDFVKRLLNKDYRKRLTAAQALSHPWLANYHDVKIPLDMIVYKLVKAYIFSSSLRKSALAALAKTLSIAQLAYFREQFTLLGPNKSGFVSLQNFKTAVTKNSTDAIKDSRVLEYVSMVGSLQYRKLDFEEFCAAAISVLQLEGMESWEQHARRGYELFEKDGNRPIMIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGPSRAFPKA* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0577 575 FunFam CDPK-related kinase 1 116 211 - -
Vvi8g0577 575 FunFam CDPK-related kinase 3 115 287 - -
Vvi8g0577 575 PANTHER SERINE/THREONINE-PROTEIN KINASE 110 552 - -
Vvi8g0577 575 FunFam Calcium-dependent protein kinase SK5 295 389 - -
Vvi8g0577 575 SMART serkin_6 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0577 575 ProSitePatterns Protein kinases ATP-binding region signature. 129 159 IPR017441 GO:0005524
Vvi8g0577 575 MobiDBLite consensus disorder prediction 1 41 - -
Vvi8g0577 575 MobiDBLite consensus disorder prediction 8 40 - -
Vvi8g0577 575 SUPERFAMILY EF-hand 413 567 IPR011992 -
Vvi8g0577 575 Gene3D - 404 567 - -
Vvi8g0577 575 CDD STKc_CAMK 122 384 - -
Vvi8g0577 575 SUPERFAMILY Protein kinase-like (PK-like) 121 439 IPR011009 -
Vvi8g0577 575 Pfam Protein kinase domain 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0577 575 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672|GO:0006468
Vvi8g0577 575 Gene3D Phosphorylase Kinase; domain 1 116 212 - -
Vvi8g0577 575 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509
Vvi8g0577 575 Gene3D Transferase(Phosphotransferase) domain 1 213 398 - -
Vvi8g0577 575 ProSiteProfiles Protein kinase domain profile. 123 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0577 575 FunFam CDPK-related kinase 1 422 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0577 Vvi-Chr8 12293589 12299844 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0577 1 575 EF-hand Containing Proteins AT3G50530 66.878 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi8g0577 Pkinase 2.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0577 - - vvi:100246588 1132.47