Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0576 ATGCAGCCAGAAAACACGCCAGAGGGTTCAGAGTTCTGCCGGTTTTTGGCCGGTAACGTCCTAAGCGACGTCGGATGGTACGGGTTTCCTGGGAATTGTGACTTTCCGGCTATTCAAAGCTTTTGTAGCTCTTCGTTTTACCCTTCGGAGGTGTCGGGAATTGCGGATGTACCACAGTCCCGAGCTCTGACGGCTTCCATAAATCACAAGGAAGCTGAGAAACGAAGAAGAGAGAGAATTAACTCCCATCTCGATAAGCTTCGGAGTCTTCTTCCTTGCAGTTCCAAGACCGACAAAGCTTCGCTACTGGCAAAGGTGATTCAACGGGTAAAAGAGCTGAAAGAGCAGACCTCAGAAATCACACAACTCGAAACCCTCCCCTCCGAGACAGACGAAATCAACGTAATCCTCTCCGGAGATTACTCCGACGATGGAAAATCCATATTCAAAGCCTCTTTGTGCTGCGAAGACCGCACCGAGCTCTTACCGGAGTTGATCGAGATTCTGAAGTCACTCCGCCTGAAGACTCTCAAAGCAGAAATGGCGTCGCTTGGGGGACGAATCCGGAACATTCTCGTCGTCTCCGGCGACGGAGATCACAGCGACGAGTCTGTCCACTCTTTGCGCGATGCACTGAAAACCTTGGTAGACCATTCCAGTTCCAGCGGTCGGTCTAAACGGCGACGTTTCGGTGTAGATTGCAGAAAAGTTTCTGATTGA 720 0.5069 MQPENTPEGSEFCRFLAGNVLSDVGWYGFPGNCDFPAIQSFCSSSFYPSEVSGIADVPQSRALTASINHKEAEKRRRERINSHLDKLRSLLPCSSKTDKASLLAKVIQRVKELKEQTSEITQLETLPSETDEINVILSGDYSDDGKSIFKASLCCEDRTELLPELIEILKSLRLKTLKAEMASLGGRIRNILVVSGDGDHSDESVHSLRDALKTLVDHSSSSGRSKRRRFGVDCRKVSD* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0576 239 FunFam transcription factor bHLH30 59 122 - -
Vvi8g0576 239 SMART finulus 70 119 IPR011598 GO:0046983
Vvi8g0576 239 CDD bHLH_AtAIG1_like 59 136 - -
Vvi8g0576 239 Pfam Helix-loop-helix DNA-binding domain 68 113 IPR011598 GO:0046983
Vvi8g0576 239 MobiDBLite consensus disorder prediction 220 239 - -
Vvi8g0576 239 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 113 IPR011598 GO:0046983
Vvi8g0576 239 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 123 IPR036638 GO:0046983
Vvi8g0576 239 Gene3D - 60 125 IPR036638 GO:0046983
Vvi8g0576 239 PANTHER TRANSCRIPTION FACTOR BHLH30 57 230 IPR045847 GO:0003700|GO:0006355
Vvi8g0576 239 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0576 Vvi-Chr8 12276324 12277514 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0576 1 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 56.897 1.40e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi8g0576 HLH 1.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0576 - - vvi:100241466 468.774