Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0567 ATGGCAACAATCTCTGCATTTCTCATACAAATTTGTTTAACAGTAGAGTCCCCTCCGAGTGCTGATAAGATCGTCAGTTTGCCAGGACAACCACAAGTTGGTTTCCAGCAATTTGCTGGATACATAACCGTGGACGAAAAGCAACAGAGACATCTTTTCTACTACTTTGTTGAAGCAGAAACCGACCCAGCTTCAAAGCCTCTTGTTCTTTGGTTAAATGGAGGACCTGGGTGTTCATCCATTGGAGCTGGAGCATTTTGTGAACATGGGCCATTCAAACCAAGTGGAGAGATCCTGGTGAATAATGATTATAGTTGGAATAAAGTGGCAAATATGTTATACCTAGAATCACCAGCAGGGGTTGGTTTCTCCTATTCTGCAAATACATCCTTCTATGCCTTTGTGAACGATGAGATGACAGCACGAGACAATCTCAAATTCCTCCAACGCTGGTTCCTGAAATTCCCAGAATATAAAAACAGAGATCTGTTCCTCACAGGGGAGAGCTATGCAGGTCACTATGTTCCCCAACTTGCACAACTCATTGTCCAATCCAAAGTGAAATTCAATCTGAAGGGCGTAGCTATAGGGAATCCTCTTCTGGAATTCAACACGGATTTTAACTCGAGGGCTGAGTACATGTGGTCTCACGGACTAATATCAGATATAACATATGAAGCCTTCACTGTAATTTGCAACTATTCTCAAGTAAGAAGAGAGATAGTGATGGGGTCGCTTTCCCCAGCTTGTTCTGGCGTAATAAGCCAAGTCTCAAGAGAACTAGGCAAACATATCGACAGCTACGATGTCACACTTGATGTCTGTTTACCTTCGGTTGTTTCACAATCTGAGAGGCTCAATCAACCACGAGGCACAGAGAAAATTGACGTCTGTGTGGAGGATGAAACCATCAAATACTTGAACAGGAAGGACGTACAGAAAGCCCTCCACGCTCACCTCAAGGGCGTCTCAAGATGGAGTATTTGCAGCGAGGTCCTCAAATATGAATATCGGAATTTAGAGATACCTACTATTCATGTGGTGGGCGCAGTCCTCAAATCTGGAATCCGGGTCCTGGTTTACAGTGGAGATCAAGATTCAGTAGTTCCGCTGACCGGAACTCGAACCCTGGTGAATGGCCTTGCAAAGGACTTGGGACTGAATACAACTGTGCCTTATAGAAACTGGTTTCAAGGAAGACAGGTTGGTGGATGGACACAAGTATATGGTGATAAATTATCTTTCGCCACCATTAGGGGAGCATCACATGAAGCTCCATTTTCACAGCCAGAAAGATCGCTTGTGCTGTTCAATACATTTCTCCAAGGGAAGCCGCTACCAGAAGCCACTGTGGTCTTATGA 1362 0.4435 MATISAFLIQICLTVESPPSADKIVSLPGQPQVGFQQFAGYITVDEKQQRHLFYYFVEAETDPASKPLVLWLNGGPGCSSIGAGAFCEHGPFKPSGEILVNNDYSWNKVANMLYLESPAGVGFSYSANTSFYAFVNDEMTARDNLKFLQRWFLKFPEYKNRDLFLTGESYAGHYVPQLAQLIVQSKVKFNLKGVAIGNPLLEFNTDFNSRAEYMWSHGLISDITYEAFTVICNYSQVRREIVMGSLSPACSGVISQVSRELGKHIDSYDVTLDVCLPSVVSQSERLNQPRGTEKIDVCVEDETIKYLNRKDVQKALHAHLKGVSRWSICSEVLKYEYRNLEIPTIHVVGAVLKSGIRVLVYSGDQDSVVPLTGTRTLVNGLAKDLGLNTTVPYRNWFQGRQVGGWTQVYGDKLSFATIRGASHEAPFSQPERSLVLFNTFLQGKPLPEATVVL* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0567 453 ProSitePatterns Serine carboxypeptidases, histidine active site. 413 430 IPR033124 GO:0004185
Vvi8g0567 453 Pfam Serine carboxypeptidase 28 443 IPR001563 GO:0004185|GO:0006508
Vvi8g0567 453 FunFam Carboxypeptidase 17 447 - -
Vvi8g0567 453 Gene3D alpha/beta hydrolase 19 276 IPR029058 -
Vvi8g0567 453 FunFam Carboxypeptidase 344 443 - -
Vvi8g0567 453 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 24 430 IPR001563 GO:0004185|GO:0006508
Vvi8g0567 453 SUPERFAMILY alpha/beta-Hydrolases 25 447 IPR029058 -
Vvi8g0567 453 ProSitePatterns Serine carboxypeptidases, serine active site. 165 172 IPR018202 GO:0004185
Vvi8g0567 453 Gene3D - 298 333 - -
Vvi8g0567 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 413 426 IPR001563 GO:0004185|GO:0006508
Vvi8g0567 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 102 114 IPR001563 GO:0004185|GO:0006508
Vvi8g0567 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 151 176 IPR001563 GO:0004185|GO:0006508
Vvi8g0567 453 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 125 IPR001563 GO:0004185|GO:0006508
Vvi8g0567 453 Gene3D - 344 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0567 Vvi-Chr8 12155393 12157802 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0567 306 446 Calmodulin-binding Proteins AT2G22960 27.660 1.36e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0567 K16297 - vvi:100260104 919.842