Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0566 ATGATGATCCTGGCTGCAGTATGCGCAGCTCTGGTTCACTTCTGTTCATCAGCAGTGGAGTCCCACTCTGCCCAGGCTGATCAAATCAGTAGTTTGCCGGGACAACCCCGAGTCAGCTTTCAACAATTTTCGGGATACATAACCATAGATGAAAAGCAGGACAGATCTTTCTTTTACTACTTTGTTGAAGCGGAAAATGACACAACTACTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGGACCTGGTTGCTCCTCCGTGGGAGGTGGAGCTTTCGCCCAACATGGCCCTTTTAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCCGCGTGAAGTTCAATTTGAAAGGAATCCTTATGGGAGATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACATTTCTACTGGTCCCATGGCTTGATATCAGATTCTACTTACAATCTTTTCTCTTCCAAGTGCAATTATTCTCGAATGAACAGAGAGCAGACATCTGGTTCTTTATCACCTGCTTGTTTAGCTGTACGAAGCCAATATTCACAAGAAGTTGGTGACTCTGTTGACCGGTTTGATGTCACTCTTAACTCCTGCTTACCATCTGTTGATCCACAACCGCAAGTCACAGAGAATGTGGATGTTTGTATAGGAGACGAAGTAAACAAGTATTTGAATAGGGAAGATGTGCAGAAGTCTCTCCATGCTAGACTAGTTGGAGTCGCCAACTGGAGTATGTGCAGCGGTGCTCTTAGATACAATATAAAAGACAAAGAGATAACCATGATTCCTGTCATGGGCTCCCTTGTCAAGTCTGGTATCCGGACCTTTGTTTACAGTGGAGATCAAGATTCAGTAATCCCACTATTTGGAACTCGGACTCTGGTGGATGGATTGGCGAAGGAGTTGAGACTGAATACAACTGTGCCTTACAGAAATTGGTTTGAGGGAGAACAGGTTGGTGGATGGACGCAAGTTTATGGTGACATCCTATCCTTTGCCACCGTGAGAGGAGGGTCACATACAGTGCCGGGTACACAACCAGCCAGAGCACTAGTTCTGTTCACTGCATTTCTAAAAGGACAACCCCCACCAGCTGAATGA 1350 0.4474 MMILAAVCAALVHFCSSAVESHSAQADQISSLPGQPRVSFQQFSGYITIDEKQDRSFFYYFVEAENDTTTLKPLVVWFSGGPGCSSVGGGAFAQHGPFRPSGDILLTNKYSWNREANMLYPESPAGTGFSYSANTSFYTNLNDEITARDNLVFLKNWFIKFPQYKNSELFIAGESYAGHFVPQLAQLILESRVKFNLKGILMGDPLMDFDTNYNSVPHFYWSHGLISDSTYNLFSSKCNYSRMNREQTSGSLSPACLAVRSQYSQEVGDSVDRFDVTLNSCLPSVDPQPQVTENVDVCIGDEVNKYLNREDVQKSLHARLVGVANWSMCSGALRYNIKDKEITMIPVMGSLVKSGIRTFVYSGDQDSVIPLFGTRTLVDGLAKELRLNTTVPYRNWFEGEQVGGWTQVYGDILSFATVRGGSHTVPGTQPARALVLFTAFLKGQPPPAE* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0566 449 ProSitePatterns Serine carboxypeptidases, histidine active site. 413 430 IPR033124 GO:0004185
Vvi8g0566 449 Pfam Serine carboxypeptidase 34 443 IPR001563 GO:0004185|GO:0006508
Vvi8g0566 449 ProSitePatterns Serine carboxypeptidases, serine active site. 171 178 IPR018202 GO:0004185
Vvi8g0566 449 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 430 IPR001563 GO:0004185|GO:0006508
Vvi8g0566 449 FunFam Carboxypeptidase 344 443 - -
Vvi8g0566 449 SUPERFAMILY alpha/beta-Hydrolases 30 445 IPR029058 -
Vvi8g0566 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 121 131 IPR001563 GO:0004185|GO:0006508
Vvi8g0566 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 182 IPR001563 GO:0004185|GO:0006508
Vvi8g0566 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 108 120 IPR001563 GO:0004185|GO:0006508
Vvi8g0566 449 PRINTS Carboxypeptidase C serine protease (S10) family signature 413 426 IPR001563 GO:0004185|GO:0006508
Vvi8g0566 449 FunFam Carboxypeptidase 22 447 - -
Vvi8g0566 449 Gene3D alpha/beta hydrolase 21 446 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0566 Vvi-Chr8 12137642 12140060 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0566 306 445 Calmodulin-binding Proteins AT2G22960 28.571 4.91e-18 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0566 K16297 - vvi:100256829 913.679