Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0565 ATGAAACTCCACTGCTCATGGATGGTGGTACTGGCCACACTATGTGTAGCTCCGCTGTGCTTCGCGATGGAGCCCGTCTCCGAGTCGGATAAACTCGGAAGCTTGCCTGGACAACCACATGTCAGCTTCCAACAGTTTGGTGGATACGTAACCATTGATGAAAAGCAAGGCAGAGCTCTTTTTTACTACTTTGTTGAAGCAGTAACTGATCCTACTGCCTCAAAGCCTCTTGTTCTCTGGTTAACTGGAGGACCTGGTTGTTCGTCCCTAGGAGGGGGGGCTTTCATGGAACATGGCCCTTTTAGGCCCCGCGGGAACACTCTGTTCAGGAATAAGCATAGCTGGAACAGAGAGGCAAATATGTTGTATGTGGAGTCACCAGCTGGAGTTGGGTTTTCTTATTCTCGTAATAAGTCCTTCTATGATGATATAAATGATGAAGTCACAGCACGAGACAATCTCGCATTCTTGGAGGGCTGGTTCATGAAATTTCCGAAGTACAGGAACAGAGAATTATTCATTACAGGGGAGAGTTATGCAGGTCACTACGTTCCGCAACTTGCACAGCTCGTTATTAATTCCGGCAAGAATTTCAATTTGAAAGGAATCCTTATTGGAAATCCTCTTCTAGAATTCGATACTGATATAAATGCCCAAGGAGACTTTTTCTGGTCCCATGGATTGATTTCAGATTCTACACATGCACTTCTCACGTCCACCTGCAACTATTCCCAAATTATGCGATGGGTTTATAATATCAGCGAGTCTCTGTCGCCCGAGTGTTACGAGGTATATAACAAATCTGCGGGAGAAATTGGTGGATCAGTTGACCCATTTGATGTTCTTGGGGACATATGTTTATCATCGGAAGAGGTCTGCCTAACAGATGAAGTGGACGTGTATCTAAACAGGAAAGATGTGCAGAAGTCTCTCCATGCCCAGCTTGTGGGCACGCCCAACTGGACTTTATGCTATCCGGATAGTGCCCACTTCTTGAGAGACGCTGTGATTCCATCTATTAATGTTGTGGAATGGCTTGTTTGGTCTGGGATCCGCGCCTCTGTTTACAGCGGAGATCAAGATTCAAGGATCTCCCTAATTGGAACCAGGTCTTTACTGGAGGGATTGGCAAAGAAGCTGAAGCTGAAAACAACCGTGCCTTACAGAAATTGGTTCGAGAAGAAACAGGTGGGTGGGTGGACGCAAGTGTACGGTGATATCCTATCTTTTGCGACCATCAGAGGAGGTTCTCACACAGCACCCATATCACAACCGACGAGATCACTGGCGCTGTTTACGGCATTTCTAGAAGGAAAGCCCCTCCCAGATGCATGA 1335 0.4652 MKLHCSWMVVLATLCVAPLCFAMEPVSESDKLGSLPGQPHVSFQQFGGYVTIDEKQGRALFYYFVEAVTDPTASKPLVLWLTGGPGCSSLGGGAFMEHGPFRPRGNTLFRNKHSWNREANMLYVESPAGVGFSYSRNKSFYDDINDEVTARDNLAFLEGWFMKFPKYRNRELFITGESYAGHYVPQLAQLVINSGKNFNLKGILIGNPLLEFDTDINAQGDFFWSHGLISDSTHALLTSTCNYSQIMRWVYNISESLSPECYEVYNKSAGEIGGSVDPFDVLGDICLSSEEVCLTDEVDVYLNRKDVQKSLHAQLVGTPNWTLCYPDSAHFLRDAVIPSINVVEWLVWSGIRASVYSGDQDSRISLIGTRSLLEGLAKKLKLKTTVPYRNWFEKKQVGGWTQVYGDILSFATIRGGSHTAPISQPTRSLALFTAFLEGKPLPDA* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0565 444 ProSitePatterns Serine carboxypeptidases, histidine active site. 408 425 IPR033124 GO:0004185
Vvi8g0565 444 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 33 425 IPR001563 GO:0004185|GO:0006508
Vvi8g0565 444 Gene3D alpha/beta hydrolase 25 442 IPR029058 -
Vvi8g0565 444 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Vvi8g0565 444 PRINTS Carboxypeptidase C serine protease (S10) family signature 408 421 IPR001563 GO:0004185|GO:0006508
Vvi8g0565 444 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Vvi8g0565 444 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Vvi8g0565 444 Pfam Serine carboxypeptidase 37 438 IPR001563 GO:0004185|GO:0006508
Vvi8g0565 444 SUPERFAMILY alpha/beta-Hydrolases 34 442 IPR029058 -
Vvi8g0565 444 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
Vvi8g0565 444 FunFam Carboxypeptidase 25 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0565 Vvi-Chr8 12127838 12130203 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0565 301 441 Calmodulin-binding Proteins AT2G22960 28.369 1.01e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0565 K16297 - vvi:100241438 903.664