Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0562 ATGCAAACCCAGTCTTGGATGATGATCCTGGCTGCAGTATGCGCAGCTCTGGTTCACTTCTGTTCATCAGCAGTGGAGTCCCACTCTGCCCAGGCTGATCAAATCAGTAGTTTGCCGGGACAACCCCGAGTCACACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCCGCGTGAAGTTCAATTTGAAAGGAATCCTTATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACATTTCTACTGGTCCCATGGCTTGATATCAGATTCTACTTACAATCTTTTCTCTTCCAAGTGCAATTATTCTCGAATGAACAGAGAGCAGACATCTGGTTCTTTATCACCTGCTTGTTTAGCTGTACGAAGCCAATATTCACAAGAAGTTGGTGACTCTGTTGACCGGTTTGATGTCACTCTTAACTCCTGCTTACCATCTGTTGATCCACAACCGCAAGTCACAGAGAATGTGGATGTTTGTATAGGAGACGAAGTAAACAAGTATTTCAATAGGGAAGATGTGCAGAAGTCTCTCCATGCTAGACTAGTTGGAGTCGCCAACTGGAGTATGTGCAGCGGTGCTCTTAGATACAATATAAAAGACAAAGAGATAACCATGATTCCTGTCATGGGCTCCCTTGTCAAGTCTGGTATCCGGACCTTTGTTTACAGTGGAGATCAAGATTCAGTAATCCCACTATTTGGAACTCGGACTCTGGTGGATGGATTGGCGAAGGAGTTGAGACTGAATACCACTGTGCCTTACAGAAATTGGTTTGAGGGAGAACAGGTTGGTGGATGGACGCAAGTTTATGGTGACATCCTATCCTTTGCCACCGTGAGAGGAGGGTCACATACAGTGCCGGGTACACAACCAGCCAGAGTGAGCGTCGGGGCGCACTTCAGGGTCGTGTTGAGGAGCGCTCAGGTGAGCGAATTGGCCAAGGAAGCTTCAGTGTGGCCCCGTTGGTTAATAAGTGATTGGGGGCAAGGGAACAAACACTTTGATGGCACATGGAGGAGCACTTACAAGGAAGAATGA 1149 0.463 MQTQSWMMILAAVCAALVHFCSSAVESHSAQADQISSLPGQPRVTRDNLVFLKNWFIKFPQYKNSELFIAGESYAGHFVPQLAQLILESRVKFNLKGILMGNPLMDFDTNYNSVPHFYWSHGLISDSTYNLFSSKCNYSRMNREQTSGSLSPACLAVRSQYSQEVGDSVDRFDVTLNSCLPSVDPQPQVTENVDVCIGDEVNKYFNREDVQKSLHARLVGVANWSMCSGALRYNIKDKEITMIPVMGSLVKSGIRTFVYSGDQDSVIPLFGTRTLVDGLAKELRLNTTVPYRNWFEGEQVGGWTQVYGDILSFATVRGGSHTVPGTQPARVSVGAHFRVVLRSAQVSELAKEASVWPRWLISDWGQGNKHFDGTWRSTYKEE* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0562 382 ProSitePatterns Serine carboxypeptidases, serine active site. 69 76 IPR018202 GO:0004185
Vvi8g0562 382 ProSitePatterns Serine carboxypeptidases, histidine active site. 311 328 IPR033124 GO:0004185
Vvi8g0562 382 PRINTS Carboxypeptidase C serine protease (S10) family signature 311 324 IPR001563 GO:0004185|GO:0006508
Vvi8g0562 382 PRINTS Carboxypeptidase C serine protease (S10) family signature 55 80 IPR001563 GO:0004185|GO:0006508
Vvi8g0562 382 Pfam Serine carboxypeptidase 33 330 IPR001563 GO:0004185|GO:0006508
Vvi8g0562 382 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 40 328 IPR001563 GO:0004185|GO:0006508
Vvi8g0562 382 SUPERFAMILY alpha/beta-Hydrolases 40 331 IPR029058 -
Vvi8g0562 382 Gene3D alpha/beta hydrolase 22 348 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0562 Vvi-Chr8 12098665 12104651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0562 201 323 Calmodulin-binding Proteins AT2G22960 29.032 7.74e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0562 K16297 - vvi:109122998 667.151