Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0561 ATGGTGGTACTGGCCACACTATGTGTAGCTCCGCTGTGCTTCGCGATGGAGCCCGTCTCCGAGTCGGATAAACTCGGAAGCTTGCCTGGGCAACCACATGTCAGCTTCCAACAGTTTGGTGGATACGTAACCATTGATGAAAAGCAAGGCAGAGCTCTTTTTTACTACTTTGTTGAAGCAGTAACTGATCCTACTGCCTCAAAGCCTCTTGTTCTCTGGTTAACTGGAGGACCTGGTTGTTCGTCCCTAGGAGGGGGGGCTTTCATGGAACATGGCCCTTTTAGGCCCCGCGGGAACACTCTGTTAAGGAATAAGCATAGCTGGAACAGAGAGGCAAATATGTTGTATGTGGAGTCACCAGCTGGAGTTGGGTTTTCTTATTCTCGTAATAAGTCCTTCTATGATGATATAAATGATGAAGTCACAGCACGAGACAACCTCGCATTCTTGGAGGGCTGGTTCATGAAATTTCCAAAGTACAGGAACAGAGAATTATTCATTACAGGGGAGAGTTATGCAGGTCACTACGTTCCTCAACTTGCACAGCTCGTTATTAATTCCGGCAAGAATTTCAATTTGAAAGGAATCCTTATTGGAAATCCTCTTCTAGAATTCGATACTGATATGAATGCCCAAGGAGACTTTTTCTGGTCCCATGGATTGATTTCAGATTCTACACATGCACTTCTCACGTCCACCTGCAACTATTCCCAAATTATGCGATGGGTTTATAATATCAGCGAGTCTCTCTCGCCCGAGTGTTACGAGGTATATAACAAATCTGCGGGAGAAATTGGTGGATCAGTTGACCCATTTGATGTTCTTGGGGACAAATGTTTGTCATCGGAAGAGGTCTGCCTAACAGATGAAGTGGACGTGTATCTAAACAGGAAAGATGTGCAGAAGTCTCTCCATGCCCAGCTTGTGGGCACGCCCAACTGGACTTTATGCTATCCGGATAGTGCCCACTTCTTGAAAGACGCTGTGATTCCATCTATTAATGTTGTGGAATGGCTTGTTAGGTCTGGGATCCGCGCCTCTGTTTACAGCGGAGATCAAGATTCAAGGATGTCCCTATTTGGAACCAGGTCTTTACTGGAGGGATTGGCAAAGAAGCTGAAGCTGAAAACAACCGTGCCTTACAGAAATTGGTTCGAGAAGAAACAGGTGGGTGGGTGGACGCAAGTGTACGGTGATATCCTATCTTTTGCGACCATCAGAGGAGGTTCTCACACAGCACCCATATCACAACCGGCGAGATCACTGGCGCTGTTTACGGCATTTCTAGAAGGAAAGCCCCTCCCAGATGCATGA 1314 0.4658 MVVLATLCVAPLCFAMEPVSESDKLGSLPGQPHVSFQQFGGYVTIDEKQGRALFYYFVEAVTDPTASKPLVLWLTGGPGCSSLGGGAFMEHGPFRPRGNTLLRNKHSWNREANMLYVESPAGVGFSYSRNKSFYDDINDEVTARDNLAFLEGWFMKFPKYRNRELFITGESYAGHYVPQLAQLVINSGKNFNLKGILIGNPLLEFDTDMNAQGDFFWSHGLISDSTHALLTSTCNYSQIMRWVYNISESLSPECYEVYNKSAGEIGGSVDPFDVLGDKCLSSEEVCLTDEVDVYLNRKDVQKSLHAQLVGTPNWTLCYPDSAHFLKDAVIPSINVVEWLVRSGIRASVYSGDQDSRMSLFGTRSLLEGLAKKLKLKTTVPYRNWFEKKQVGGWTQVYGDILSFATIRGGSHTAPISQPARSLALFTAFLEGKPLPDA* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0561 437 SUPERFAMILY alpha/beta-Hydrolases 27 435 IPR029058 -
Vvi8g0561 437 ProSitePatterns Serine carboxypeptidases, histidine active site. 401 418 IPR033124 GO:0004185
Vvi8g0561 437 PRINTS Carboxypeptidase C serine protease (S10) family signature 153 178 IPR001563 GO:0004185|GO:0006508
Vvi8g0561 437 PRINTS Carboxypeptidase C serine protease (S10) family signature 401 414 IPR001563 GO:0004185|GO:0006508
Vvi8g0561 437 PRINTS Carboxypeptidase C serine protease (S10) family signature 104 116 IPR001563 GO:0004185|GO:0006508
Vvi8g0561 437 PRINTS Carboxypeptidase C serine protease (S10) family signature 117 127 IPR001563 GO:0004185|GO:0006508
Vvi8g0561 437 ProSitePatterns Serine carboxypeptidases, serine active site. 167 174 IPR018202 GO:0004185
Vvi8g0561 437 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 26 418 IPR001563 GO:0004185|GO:0006508
Vvi8g0561 437 FunFam Carboxypeptidase 18 435 - -
Vvi8g0561 437 Gene3D alpha/beta hydrolase 18 435 IPR029058 -
Vvi8g0561 437 Pfam Serine carboxypeptidase 30 431 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0561 Vvi-Chr8 12093772 12096085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0561 294 434 Calmodulin-binding Proteins AT2G22960 29.078 2.59e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0561 K16297 - vvi:100251693 884.404