Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0560 ATGAAACTCCACTGCTCATGGATGGTGGTACTGGCCACACTATGTGTAGCTCCGCTGTGCTTCGCGATGGAGCCCGTCTCCGAGTCGGATAAACTCGGAAGCTTGCCTGGACAACCACATGTCAGCTTCCAACAGTTTGGTGGATACGTAACCATTGATGAAAAGCAAGGCAGAGCTCTTTTTTACTACTTTGTTGAAGCAGTAACTGATCCTACTGCCTCAAAGCCTCTTGTTCTCTGGTTAACTGGAGGACCTGGTTGTTCGTCCCTAGGAGGGGGGGCTTTCATGGAACATGGCCCTTTTAGGCCCCGCGGGAACACTCTGTTAAGGAATAAGCATAGCTGGAACAGAGAGGCAAATATGTTGTATGTGGAGTCCCCAGCTGGAGTTGGGTTTTCTTATTCTCGTAATAAGTCCTTCTATGATGATATAAATGATGAAGTCACAGCACGAGACAACCTCGCATTCTTGGAGGGCTGGTTCATGAAATTTCCAAAGTACAGGAACAGAGAATTATTCATTACAGGGGAGAGTTATGCAGGTCACTACGTTCCTCAACTTGCACAGCTCGTTATTAATTCCGGCAAGAATTTCAATTTGAAAGGAATCCTTATTGGAAATCCTCTTCTAGAATTCGATACTGATATGAATGCCCAAGGAGACTTTTTCTGGTCCCATGGATTGATTTCAGATTCTACACATGCACTTCTCACGTCCACCTGCAACTATTCCCAAATTATGCGATGGGTTTATAATATCAGCGAGTCTCTCTCGCCCGAGTGTTACGAGGTATATAACAAATCTGCGGGAGAAATTGGTGGATCAGTTGACCCATTTGATGTTCTTGGGGACAAATGTTTATCATCGGTAAGAAACACCACTCCAAATATATCTGCGTTCATACAAGGCACCTTTTTCAACGCATGGAAATTGTGCCCTTCCTATAATAAATTGGAGAATCAAGCTGTCTCCATAGCTTCTCTTTCTCTCTCGGTAACCATGCAAACCCAGTCTTGGATGATGATCCTGGCTGCAGTATGCGCAGCTCTGGTTCACTTCTGTTCATCAGCAGTGGAGTCCCACTCTGCCCAGGCTGATCAAATCAGTAGTTTGCCGGGACAACCCCGAGTCAGCTTTCAACAATTTTCGGGATACATAACCATAGATGAAAAGCAGGACAGATCTTTCTTTTACTACTTTGTTGAAGCGGAAAATGACACAACTGCTTTGAAGCCTCTGGTTGTCTGGTTCAGTGGAGGACCTGGTTGCTCCTCCGTGGGAGCCCAACATGGCCCTTTTAGACCCAGTGGAGATATCCTACTCACCAATAAATACAGTTGGAACAGAGAAGCAAACATGTTATATCCGGAGTCACCTGCTGGAACTGGATTCTCTTATTCTGCTAATACGTCCTTCTACACCAACCTAAATGATGAGATTACAGCACGAGACAATCTCGTCTTCTTGAAGAATTGGTTCATCAAATTCCCACAATACAAGAACAGCGAATTGTTCATAGCTGGAGAGAGTTATGCTGGTCACTTTGTTCCACAACTTGCCCAACTCATTCTTGAGTCCAGCGTGAAGTTCAATTTGAAAGGAATCCTTATGGGAAATCCTCTTATGGATTTCGATACTAATTACAACTCAGTCCCACATTTCTACTGGTCCCATGGCTTGATATCAGATTCTACTTACAATCTTTTCTCTTCCAAGTGCAATTATTCTCGAATGAACAGAGAGCAGACATCTGGTTCTTTATCACCTGCTTGTTTAGCTGTACGAAGCCAATATTCACAAGAAGTTGGTGACTCTGTTGACCGGTTTGATGTCACTCTTAACTCCTGCTTACCATCTGTTGATCCACAACCGCAAGTCACAGAGAATGTGGATGTTTGTATAGGAGACGAAGTAAACAAGTATTTCAATAGGGAAGATGTGCAGAAGTCTCTCCATGCTAGACTAGTTGGAGTCGCCAACTGGAGTATGTGCAGCGGTGCTCTTAGATACAATATAAAAGACAAAGAGATAACCATGATTCCTGTCATGGGCTCCCTTGTCAAGTCTGGTATCCGGACCTTTGTTTACAGTGGAGATCAAGATTCAGTAATCCCACTATTTGGAACTCGGACTCTGGTGGATGGATTGGCGAAGAAGTTGAGACTGAATACAACTGTGCCTTACAGAAATTGGTTTGAGGGAGAACAGGTCGGCTTCTATACATGA 2226 0.4412 MKLHCSWMVVLATLCVAPLCFAMEPVSESDKLGSLPGQPHVSFQQFGGYVTIDEKQGRALFYYFVEAVTDPTASKPLVLWLTGGPGCSSLGGGAFMEHGPFRPRGNTLLRNKHSWNREANMLYVESPAGVGFSYSRNKSFYDDINDEVTARDNLAFLEGWFMKFPKYRNRELFITGESYAGHYVPQLAQLVINSGKNFNLKGILIGNPLLEFDTDMNAQGDFFWSHGLISDSTHALLTSTCNYSQIMRWVYNISESLSPECYEVYNKSAGEIGGSVDPFDVLGDKCLSSVRNTTPNISAFIQGTFFNAWKLCPSYNKLENQAVSIASLSLSVTMQTQSWMMILAAVCAALVHFCSSAVESHSAQADQISSLPGQPRVSFQQFSGYITIDEKQDRSFFYYFVEAENDTTALKPLVVWFSGGPGCSSVGAQHGPFRPSGDILLTNKYSWNREANMLYPESPAGTGFSYSANTSFYTNLNDEITARDNLVFLKNWFIKFPQYKNSELFIAGESYAGHFVPQLAQLILESSVKFNLKGILMGNPLMDFDTNYNSVPHFYWSHGLISDSTYNLFSSKCNYSRMNREQTSGSLSPACLAVRSQYSQEVGDSVDRFDVTLNSCLPSVDPQPQVTENVDVCIGDEVNKYFNREDVQKSLHARLVGVANWSMCSGALRYNIKDKEITMIPVMGSLVKSGIRTFVYSGDQDSVIPLFGTRTLVDGLAKKLRLNTTVPYRNWFEGEQVGFYT* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0560 741 ProSitePatterns Serine carboxypeptidases, serine active site. 506 513 IPR018202 GO:0004185
Vvi8g0560 741 SUPERFAMILY alpha/beta-Hydrolases 369 736 IPR029058 -
Vvi8g0560 741 FunFam Carboxypeptidase 361 741 - -
Vvi8g0560 741 Gene3D - 679 741 - -
Vvi8g0560 741 Gene3D - 633 668 - -
Vvi8g0560 741 Gene3D alpha/beta hydrolase 362 617 IPR029058 -
Vvi8g0560 741 Pfam Serine carboxypeptidase 37 291 IPR001563 GO:0004185|GO:0006508
Vvi8g0560 741 Pfam Serine carboxypeptidase 373 736 IPR001563 GO:0004185|GO:0006508
Vvi8g0560 741 PRINTS Carboxypeptidase C serine protease (S10) family signature 504 517 IPR001563 GO:0004185|GO:0006508
Vvi8g0560 741 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Vvi8g0560 741 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 134 IPR001563 GO:0004185|GO:0006508
Vvi8g0560 741 PRINTS Carboxypeptidase C serine protease (S10) family signature 111 123 IPR001563 GO:0004185|GO:0006508
Vvi8g0560 741 SUPERFAMILY alpha/beta-Hydrolases 21 306 IPR029058 -
Vvi8g0560 741 FunFam Carboxypeptidase 25 296 - -
Vvi8g0560 741 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 367 734 IPR001563 GO:0004185|GO:0006508
Vvi8g0560 741 Gene3D alpha/beta hydrolase 25 338 IPR029058 -
Vvi8g0560 741 ProSitePatterns Serine carboxypeptidases, serine active site. 174 181 IPR018202 GO:0004185
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0560 Vvi-Chr8 12066763 12073355 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0560 638 741 Calmodulin-binding Proteins AT2G22960 27.619 5.76e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0560 K16297 - vvi:100255006 831.247