Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0558 ATGGACGAGGAAGACCCTGTGAGTCTCTTCATGAGCCTTGATCATTGGCGTGAGTTTCCGATCGACGCTGATGATGACGAGGATTCGTCGCAGTGTCCTCTCTCGTCGCCGTCCGAGACTTACCTGGTGGGTTTCGTCATAGTCAACATCGTGGGTATTCAGTACTATTCGGGGACCATCAGCGGCCGCGAAAGGGTTGGGCTGGTGCGGGAACCGTTGAATCCGTACGACAGGAACGCCATCAAGGTGCTCAACACGACGACGATCCAGGTGGGTCACATTGACCGGTCGGCGGCGGCGGTTCTGGCGCCGTTGATGGACGCTAATTTGGTGACTGTGGAAGGCATTGTTCCCAACACTCCCGGAAGTGGAAACAGGTATCGAATTCCATGCCAAGTTCATATATTTGCACAGATTGAGTGGTTTCCACGGGTGCGGTCAGCAATTTCCAGAGGTGGGTTGCAGCTAATTTCGGATTCGGATCCATCGTTTACCTTGTCAGAAGCTGTTATTGTGAAGGAGAAGAAGTGTGATAAGGAGTTCAAGAGTTTGGATGAGATATTCAAGTTGGCTATTGAGAATGTGAACAAACAGGGGGCCTTGGAAGCCATGGAGCCCCCGAAGGATGTGATCAAATCGGAGCTTTTCTTGCACCAAAAGGAAGCTTTGGGATGGCTGGTTCACAGGGAGAATTCCTGTGAATTGCCCCCTTTCTGGGAAAAGCAAAATGGGTCTTATGTCAATGTGTTGACCAATTACCAAACAAACAAACGGCCAGAGCCATTGAGAGGTGGAATTTTTGCTGACGACATGGGATTGGGTAAAACTCTAACATTGTTATGTTTAATTGCTTTCGATAAATGCAGTAGTGATCTTTCTTATAGTGTAAATAGGGACAATATCGAAAAACTTGGTGAAGAGGATGAGGAACTCATTGTTTCAAGTGGTAAGAAGTCTAGGAAGGGGAGAGTGAGTAGAAAGGCCAGTGGCTTGCGCAAAAAACGCAAAACTGATGATACCCCTTCTGATGACATGCTAAAAGGAAACTCTGTGGGTGCTTCTCATAAGTTTTCAACTGTTTTAGTTTCAAAGACCACATTAATAGTCTGTCCTCCTTCTGTATTTTCAACCTGGGTAACACAGTTATTGGAACATACTACACCCAAAAGGTTGAAGGTGTATATGTATTATGGAAATAGGACTCAAGAGGCGGAAGAGCTTCAGAAGTATGATATAGTGTTGACCACGTATAGTACCTTGGCTACTGAAGAAGCTTGGTCAGGGTCTCCTGTGAAGAAGATAGAATGGTGGCGAGTTATTTTGGATGAAGCACATATGATCAAGAATGTGAATGCTCAACAGAGTCAAGCTGTCACCAATCTGAGGGCCAAGCGGAGGTGGGTTGTTACAGGAACACCCATCCAGAATGGCACATTTGACTTGTTTTCTCTCATGGCATTTTTGAGGTTTGAGCCATTTTCAATTAAGAGCTACTGGCAGAGCTTGGTGCAACGCCCACTTGGTCAGGGAAAAGAGAAGGGGCTCTCACGGCTGCAGGTTTTAATGGCAACCATCTCATTGCGGAGAACAAAAGACAAGGGTTTGATTGGATTGCCACCTAAAAGTGTAGAAACTTGTTTTGTGGAACTCTCTGCAGAAGAACGTGAACTGTATGATCAGATGGAAGCAGAAGGAAAGTGTGTCATCCGTGATTATATTGATGCTGGTAGTGTGATGCGCAACTATTCAACTGTACTTGGCATAATTTTACGACTTCGTCAGATTTGTACAGATGTAGCTTTGTGTCCCTCAGATCTGAGATCACTGCTTCTATCTAACAACATTGAAGATGTATCTAATAACCCAGAATTGCTTAAAAAGATGGTCTTAGTGCTACAAGATGGTGAAGATTTCGACTGTCCAATTTGCATTTCTCCACCGACTAATATTGTCATTACATGTTGTGCTCACATCTTTTGCCGTGTCTGCATCCTGAAAACTCTGAAGCGCACCAAACCCTGTTGTCCCCTTTGCCGCCATCCTTTATCACAATCTGACCTTTTCTCAGCCCCTCCGGAATCTACTGAAACAGACAACAGTGAAATACCGTCTTCTGAATGTACATCTTCCAAGGTGCTTACACTCCTAAAATTTCTTTCTGCATCGAGGGATCAAAATCCTTCTACAAAATCAGTGGTATTTTCACAATTCCGGAAAATGTTATTGTTACTCGAGCAACCACTTAAAGCAGCAGGTTTCAAGACCTTGCGCTTGGATGGGTCAATGAATGCAAAAAGACGAGCTCAAGTGATTGAGGAATTTGGAGCCCCCGGCCCAAATGGCCCCACAGTGTTGCTTGCAAGTCTGAAGGCTTCAGGTGCTGGTATAAATCTTACAGCTGCTTCCAGGGTCTATTTGTTGGAGCCATGGTGGAACCCGGCAGTTGAGGAACAGGCCATGGACCGTGTCCACCGCATAGGGCAAAAGGAGGATGTAAAAATTGTGAGGTTGATTGCTCGAAACAGCATTGAGGAGCGAATATTGGAGTTGCAGGAGAGGAAGAAGAAGCTGGCTAAGGAAGCCTTTGGGAGGAGGGGCCTGAAGGATAGGAGGGAGGTTGGTGTAGAAGATCTCCGCATGCTCATGTCCTTGTAA 2655 0.4576 MDEEDPVSLFMSLDHWREFPIDADDDEDSSQCPLSSPSETYLVGFVIVNIVGIQYYSGTISGRERVGLVREPLNPYDRNAIKVLNTTTIQVGHIDRSAAAVLAPLMDANLVTVEGIVPNTPGSGNRYRIPCQVHIFAQIEWFPRVRSAISRGGLQLISDSDPSFTLSEAVIVKEKKCDKEFKSLDEIFKLAIENVNKQGALEAMEPPKDVIKSELFLHQKEALGWLVHRENSCELPPFWEKQNGSYVNVLTNYQTNKRPEPLRGGIFADDMGLGKTLTLLCLIAFDKCSSDLSYSVNRDNIEKLGEEDEELIVSSGKKSRKGRVSRKASGLRKKRKTDDTPSDDMLKGNSVGASHKFSTVLVSKTTLIVCPPSVFSTWVTQLLEHTTPKRLKVYMYYGNRTQEAEELQKYDIVLTTYSTLATEEAWSGSPVKKIEWWRVILDEAHMIKNVNAQQSQAVTNLRAKRRWVVTGTPIQNGTFDLFSLMAFLRFEPFSIKSYWQSLVQRPLGQGKEKGLSRLQVLMATISLRRTKDKGLIGLPPKSVETCFVELSAEERELYDQMEAEGKCVIRDYIDAGSVMRNYSTVLGIILRLRQICTDVALCPSDLRSLLLSNNIEDVSNNPELLKKMVLVLQDGEDFDCPICISPPTNIVITCCAHIFCRVCILKTLKRTKPCCPLCRHPLSQSDLFSAPPESTETDNSEIPSSECTSSKVLTLLKFLSASRDQNPSTKSVVFSQFRKMLLLLEQPLKAAGFKTLRLDGSMNAKRRAQVIEEFGAPGPNGPTVLLASLKASGAGINLTAASRVYLLEPWWNPAVEEQAMDRVHRIGQKEDVKIVRLIARNSIEERILELQERKKKLAKEAFGRRGLKDRREVGVEDLRMLMSL* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0558 884 Pfam Helicase conserved C-terminal domain 711 827 IPR001650 -
Vvi8g0558 884 Pfam SNF2-related domain 218 600 IPR000330 GO:0005524|GO:0140658
Vvi8g0558 884 Pfam HIRAN domain 44 139 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vvi8g0558 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 530 881 IPR027417 -
Vvi8g0558 884 MobiDBLite consensus disorder prediction 315 348 - -
Vvi8g0558 884 Pfam Zinc finger, C3HC4 type (RING finger) 640 678 IPR018957 GO:0046872
Vvi8g0558 884 SUPERFAMILY RING/U-box 631 685 - -
Vvi8g0558 884 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 183 882 - -
Vvi8g0558 884 SMART ultradead3 211 498 IPR014001 -
Vvi8g0558 884 Gene3D - 539 883 IPR027417 -
Vvi8g0558 884 ProSitePatterns Zinc finger RING-type signature. 655 664 IPR017907 -
Vvi8g0558 884 Gene3D - 185 298 IPR038718 -
Vvi8g0558 884 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 256 491 IPR014001 -
Vvi8g0558 884 CDD RING-HC_HLTF 635 687 - -
Vvi8g0558 884 ProSiteProfiles Zinc finger RING-type profile. 640 679 IPR001841 -
Vvi8g0558 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 623 694 IPR013083 -
Vvi8g0558 884 SMART HIRAN_2 43 139 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vvi8g0558 884 Coils Coil 840 860 - -
Vvi8g0558 884 SMART helicmild6 742 827 IPR001650 -
Vvi8g0558 884 SMART ring_2 640 678 IPR001841 -
Vvi8g0558 884 Gene3D - 35 156 - -
Vvi8g0558 884 CDD SF2_C_SNF 709 838 - -
Vvi8g0558 884 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 714 879 IPR001650 -
Vvi8g0558 884 Gene3D - 348 530 IPR038718 -
Vvi8g0558 884 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 529 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0558 Vvi-Chr8 12047698 12055429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0558 6 884 RAD5 or RAD16-like Gene Family AT5G05130 63.820 0.0 1135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vvi8g0558 SNF2_N 2e-78 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0558 K15711 - vvi:100263696 1748.41