Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0557 ATGGGCTCGACTGGCTCTGGAAAATCTCGCTTATCCATCGACATTGCCTCCCATTACTTGGGCGAGGTCATCAACTCTGACAAAATGCAAGTCTACAAAGGACTGGATATCATCACCAACAAAATGGCCGAGTCCGACCGTCGAGGTGTGCCTCACCACCTGATCGGGGAGGTGGAGCCCGACGTGGACTTCACCGCCGAAGACTTCTGCATGGCGGCCACCTCCGCCATCGAGCGCATCGTGGAGCAGGGACGTGTGCCCATCATCGTGGGTGGGTCCAACTCCTTCGTGGAGGCTCTGGTCCAAAACCCATCGGTGGAGTTCAAGTCCAGATACGAACCATGCTTCATCTGGCTGAACGTGGCCCCACCAATTCTGGACACATACCTTTCGAAAAGGGTGGATGACATGGTGAGGGGTGGGCTAGTGGAAGAAGTGAAGGCGGTTTTCTCTCCAAATCTGGACTACAAGCGGGGGATTTATAGGTCGATTGGAGTGCCGGAGATGGACGCCTACTTGAGGGCTGACAGGATGGTAGGTTACATAGAAAGGGAGACGCTGCTGAAGGAGGCTATCGATGATATCAAGGCCAACACCTGCAAACTGGCTAGTAAGCAAGTGGGGAAAATTGAGACGTTGAGGAACAAGCTTGGGTGGAATATGCACCAGATTGATACCACCCCTGTGTTTGAGAAATGTGGAGAAGAGGCAGACGCTGCCTGGGAAATGCTGGTGAAGAAACCAACCTTTGGGATCATAGATTCTTTCCTTACTTGA 777 0.5277 MGSTGSGKSRLSIDIASHYLGEVINSDKMQVYKGLDIITNKMAESDRRGVPHHLIGEVEPDVDFTAEDFCMAATSAIERIVEQGRVPIIVGGSNSFVEALVQNPSVEFKSRYEPCFIWLNVAPPILDTYLSKRVDDMVRGGLVEEVKAVFSPNLDYKRGIYRSIGVPEMDAYLRADRMVGYIERETLLKEAIDDIKANTCKLASKQVGKIETLRNKLGWNMHQIDTTPVFEKCGEEADAAWEMLVKKPTFGIIDSFLT* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0557 258 FunFam Adenylate isopentenyltransferase 5, chloroplastic 123 221 - -
Vvi8g0557 258 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 123 221 - -
Vvi8g0557 258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 103 IPR027417 -
Vvi8g0557 258 Gene3D - 1 257 IPR027417 -
Vvi8g0557 258 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 1 256 IPR039657 -
Vvi8g0557 258 Pfam IPP transferase 30 103 - -
Vvi8g0557 258 Pfam IPP transferase 108 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0557 Vvi-Chr8 12030366 12031142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0557 110 257 C2H2 Transcription Factor Family AT2G27760 33.143 1.95e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0557 K10760 - vvi:100854018 518.464