Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0555 ATGGCTACGAATTCTGGTGCCCTTGATCAGTGGAGAAATTATTTTCGAACTGCGAATTCGGATATTTTTGGCATCATTGAGCATGCAATCCTTGTGGCGGCTTCCGATTGTCCGAAGGAGTTCAGGCTCCGGAGAGATCGAATTGCTGAGAGGCTGTTTTCCTGTAAATTAACGAGGTGTTTCGGTTGCGATCGAGTCGAGTTGGCGGTACCTGAAAATGATGGAGGAGGTTGTAAGATTGAATTTGATATGGATGCATGTCAATTTGAGGCTGGGGGTAGTGGGAGCAAAGAAAGCAAGGTTAACAGTAGTAGCAAAGAAAGCAAGGCAAACAGTATTAGAGAGGATCATGGAGAAATGAACATGAACCAGGTTAGCAATTATAGCTATGGAGAAGCTGAGGCATTGACTGATGAGATTGAAGAAGAGACTCAAATTGCCGGGGAAGTGTTGAGGATCAGGGAGATTCTCGAACACAGTAAAGATGAGTCTGATTCGGTATTGTTCGATTCATTGAGGAGACTTCAGTTGATGGTGCTGTCTGTGGATAATCTTAAGGCGACTGAGATTGGAAAGGCGGTTAATGGTCTCCGAAAACACGGATCAAAGCAGATTCGTCAACTCGCGCGTACACTCATAGATGAATGGAAGGATATGGTAGATGAGTGGGTCAATGCAACAGCTGCTATTGCAGAAGGTACTCCAGACTCCGTGAACCCATCTGTTGTTGATGATGATGATGATGAAGAAGGGCTTCCTTTTCCTCCAATGGATGAACTATCTTTCCTCACAACTCAGCCTACTTCACTAGAGCTATCTCAGTTCTTTGATGGCATGGATGATGATGGAAATCCGAGAAACAATGGGGAGTTCAACAGGAACCGTGAAAATGGAAGAAAGCCAGCATTGGAGAACCAAAATATTTCAAAGCGGAAACAGCAGCTTCCTGATGAAGCAAATGGTGTTACCAAGGACAAGGGTCAACAAATAAAGAAGCAAGAACCTGTTGTAAAATCAAATAAGCCCATAAATACTCAATCTGGGTTTGGGAGACCACAAGAAATTTTAGTGAGGCCAAATAGGCCCTCAAACACCGACTCTGGACCTGGGAGACCTCCAAAACCTGGTGTAGGACAGAAGGTTAATAATGAAACCAAGTTCTTGCAGAAATCAGATAAGCCTGCCATCCATAGGAAACCAGTGGTTGGTCAACAAGATAGGAAGACACAATCCAAGTGA 1239 0.4407 MATNSGALDQWRNYFRTANSDIFGIIEHAILVAASDCPKEFRLRRDRIAERLFSCKLTRCFGCDRVELAVPENDGGGCKIEFDMDACQFEAGGSGSKESKVNSSSKESKANSIREDHGEMNMNQVSNYSYGEAEALTDEIEEETQIAGEVLRIREILEHSKDESDSVLFDSLRRLQLMVLSVDNLKATEIGKAVNGLRKHGSKQIRQLARTLIDEWKDMVDEWVNATAAIAEGTPDSVNPSVVDDDDDEEGLPFPPMDELSFLTTQPTSLELSQFFDGMDDDGNPRNNGEFNRNRENGRKPALENQNISKRKQQLPDEANGVTKDKGQQIKKQEPVVKSNKPINTQSGFGRPQEILVRPNRPSNTDSGPGRPPKPGVGQKVNNETKFLQKSDKPAIHRKPVVGQQDRKTQSK* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0555 412 MobiDBLite consensus disorder prediction 93 114 - -
Vvi8g0555 412 CDD TFIIS_I 147 221 - -
Vvi8g0555 412 MobiDBLite consensus disorder prediction 301 316 - -
Vvi8g0555 412 MobiDBLite consensus disorder prediction 283 300 - -
Vvi8g0555 412 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 138 232 IPR035441 -
Vvi8g0555 412 Pfam TFIIS helical bundle-like domain 172 220 IPR017923 -
Vvi8g0555 412 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 7 410 IPR044805 -
Vvi8g0555 412 ProSiteProfiles TFIIS N-terminal domain profile. 148 223 IPR017923 -
Vvi8g0555 412 MobiDBLite consensus disorder prediction 274 412 - -
Vvi8g0555 412 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 145 233 IPR035441 -
Vvi8g0555 412 MobiDBLite consensus disorder prediction 231 257 - -
Vvi8g0555 412 MobiDBLite consensus disorder prediction 333 351 - -
Vvi8g0555 412 MobiDBLite consensus disorder prediction 386 412 - -
Vvi8g0555 412 SMART TFS2_5 147 222 IPR003617 GO:0005634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi8g0555 Med26 8.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0555 - - vvi:100250012 751.125