Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0550 ATGGCTTCAAGACCCATTGTTCCGCAGCACCATCAACCCAGAGGTGAGGCATTAGCTGGGGATGGTAAGCAGAGGAAAAACGGGGCGGCTGAAGGGAGAAACCGCCGAGCCCTAGGCGACATTGGTAATCTTGTAACTGTTAGAGGAGTAGATGGCAAGCCACAGCCTCAGATCTCTCGTCCTGTTACTAGAAGTTTCTGCGCTCAATTACTTGCAAATGCACAAGCAGCTGCAGCAGCTGAAAATAACAAGAAAGCAGTCTGTGTTAACGTTGATGGAGCTCCCATCATCACCGATGGAGGGGCAGCAGGCAAAGCACCTGTGGCAGCAAAGGCGGCAGCCCAGAAGAAAGTCACAATTAAGCCAAAGCCTGAACAAGTGATTGAGATTAGCCCAGATTCGGAAGAGGTTAAGCAAGAGAAGCCTGTGAGCAAGAAAAAGGGCAGAGAAGGTTCATCAAAGAAAAATGTTAAAACCATGACTTCTATCCTTACTGCTAGGAGCAAGGTAGCTTGTGGCTTGACCAATAAACCAAAGGAGCAGATTGTTGACATTGATGCAGCAGATGCTGGTAATGACCTGGCTGCAGTGGAATATGTGGAGGACATTTACAAGTTCTATAAATTGATTGAGAGCGAGAGCCAAGTTCATGACTATATGGATTCCCAAGCCGAGATAAATGAGAAGATGAGAGCCATCTTGGTGGACTGGTTGATTGAAGTTCACCACAAATTTGAGCTTATGCCAGAGACTTTGTACCTCACAATCAACATTGTTGATCGTTTCCTTTCAATCAAGACTGTGCCAAGAAGGGAACTGCAGTTGGTGGGCATCAGTGCTATGCTTATGGCCTCCAAATATGAAGAAATTTGGGCCCCAGAGGTGAATGACTTCGTTTGCATCTCAGACAGAGCATACACGCATCAACAAATACTGATGATGGAGAAAGCCATACTGGGCAAGCTGGAATGGACCTTGACAGTCCCCACACCTTATGTTTTCCTTGTCCGATTCGTTAAGGCCTCAATCCCTGATACGCAGATGGAACACATGGTCTATTTCTTTGCTGAGCTTGGATTGACTAATTATGTCACCATGATGTACTGCCCATCAATGCTTGCTGCCTCAGCAGTCTATGCTGCTAGGTGCACCCTGAGCAAGAGCCCTGTTTGGGATGAAACACTGAAAGTCCACACGGGTTACTCAGAGACACAGCTGCTTGGTTGTGCCAAGCTCCTTGTGAGTTTCCACTCCATTGCTGCAGAGAACAAGCTTAAGGTGGTGTACAGAAAGTATTCCCAGCCTCAGCGAAGTGGGGTATCACTCCTTCCACCTGCAAAATCTCTCTTGGCTGCATCATGA 1362 0.4721 MASRPIVPQHHQPRGEALAGDGKQRKNGAAEGRNRRALGDIGNLVTVRGVDGKPQPQISRPVTRSFCAQLLANAQAAAAAENNKKAVCVNVDGAPIITDGGAAGKAPVAAKAAAQKKVTIKPKPEQVIEISPDSEEVKQEKPVSKKKGREGSSKKNVKTMTSILTARSKVACGLTNKPKEQIVDIDAADAGNDLAAVEYVEDIYKFYKLIESESQVHDYMDSQAEINEKMRAILVDWLIEVHHKFELMPETLYLTINIVDRFLSIKTVPRRELQLVGISAMLMASKYEEIWAPEVNDFVCISDRAYTHQQILMMEKAILGKLEWTLTVPTPYVFLVRFVKASIPDTQMEHMVYFFAELGLTNYVTMMYCPSMLAASAVYAARCTLSKSPVWDETLKVHTGYSETQLLGCAKLLVSFHSIAAENKLKVVYRKYSQPQRSGVSLLPPAKSLLAAS* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0550 453 MobiDBLite consensus disorder prediction 1 37 - -
Vvi8g0550 453 MobiDBLite consensus disorder prediction 129 157 - -
Vvi8g0550 453 Pfam Cyclin, N-terminal domain 202 326 IPR006671 -
Vvi8g0550 453 CDD CYCLIN_AtCycB-like_rpt1 179 324 - -
Vvi8g0550 453 Gene3D - 202 442 - -
Vvi8g0550 453 SUPERFAMILY Cyclin-like 328 448 IPR036915 -
Vvi8g0550 453 FunFam Cyclin-B1-4 215 322 - -
Vvi8g0550 453 FunFam G2/mitotic-specific cyclin-1 323 441 - -
Vvi8g0550 453 PIRSF Cyclin_A_B_D_E 1 453 IPR046965 GO:0016538|GO:0044772
Vvi8g0550 453 Gene3D - 216 327 - -
Vvi8g0550 453 MobiDBLite consensus disorder prediction 16 33 - -
Vvi8g0550 453 PANTHER CYCLINS 147 434 IPR039361 -
Vvi8g0550 453 SMART Cyclin_C_2 329 446 IPR004367 -
Vvi8g0550 453 ProSitePatterns Cyclins signature. 231 262 IPR006671 -
Vvi8g0550 453 SMART cyclin_7 333 415 IPR013763 -
Vvi8g0550 453 SMART cyclin_7 236 320 IPR013763 -
Vvi8g0550 453 MobiDBLite consensus disorder prediction 129 154 - -
Vvi8g0550 453 CDD CYCLIN_AtCycB-like_rpt2 329 445 - -
Vvi8g0550 453 Pfam Cyclin, C-terminal domain 329 445 IPR004367 -
Vvi8g0550 453 SUPERFAMILY Cyclin-like 192 326 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0550 Vvi-Chr8 11925448 11928200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0550 1 453 Core Cell Cycle Gene Families AT4G37490 53.030 8.96e-147 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0550 K21777 - vvi:100261859 817.379