Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0548 ATGCCTTCAAAGACAAAGAAGCATTCCAAGTCATTATCGAAGCTCTCGTATTCTGATAAGTCAGAATCTCCGTCTGTTTCATCAGTGTTGACACCACCGCCTGATTTAGAAATTAGCGAAGAAGATCTCCTACGGTATCTTGATGAGGCTTCAAGCAAATGCCCTTCTCTGATTGGGAAATCTGCTTTCATTGGCCGAGTCACAGGTGTTGACCCTGATTCAAAAGGCTGTAAAATTTGGCTTTCAGAACCTTCTATGGTTGCTTTTAACCTTGCCCCTGGTTCTACTGTTTCGGTGTCACTTGCCTCGTCAAAGAAGAAATTTTCAAATGGCTTTCCTCTCAGCTCATTAACAGATGAAAGTACTAGACATTTTCAAGTTGATTCTGGGAATAAAATGCCTGGTGAAGCAGGGAACTACTTTGCTCTTGCTACAGTTTTTCCTTCTTGTAAGGTGTTGAAGAATGGGGTACGGCTTTCGTTGAACCTTTATCATACTATGGGTTCTCCTGCTTCAGCCAGGATTGTGTTTGTTTACCTTATCCAAAGTCAATCTGTTACTGGTTTTGTAAATGGAAGTCGTAAATCACACAGCACGACAATTAATGGTCTCTCACTATACAAGTGCAAGGAGTTATATTTAGAGATGATTCCTTCAAAGAATGGATCGACGGTGAACAGTGATATGCAGTCAACTGTTCAAGTTTCTACTGAAACAACAAATTATCAAGTTAGCAATGGAGCTGCCTCATCGCCTAAGACACCAGTGTCATATCAGTCAAAGCTTATTTCTCCTAATTCTAATCAGTTGACTTCACCTATATGTGACGATTCAGTGTCAAGTTTATCCAATCCAAATAACAAAATTTTTGCTTCATTTGACATAACAGAAGTATTAGGTGATGAAACTGCAAAGAAACTTTTGCAGTCATGTGCTGCTTCATGGTTATACTCTCGCAGTTTACTCACCGGGAATCTTGTGACAATCCCAATACTTTCAGAACTTTGCACTTTCTGTGTGAGAGGTGCTATTAAATTGTCACCTGATAGTGATAATCATGATTTGACAGATGAAAGAAGTCATGGTTTGTTCTCTCGAGCTCCTGATTCAGTGAGCCATGTGGATGATGCTTGTGTTGTAGACCGTGAAACAAAAGTATATTTATATTTGCCATCAAATTCATCATCAGAGACTCCACAGAAAGGACGTCCACCACATGTGGAGCTTGAATTTAAGAATTTCAAAGCTAACGTTGGAAGTGCTGTTAAATTGGGTGGTCTATCAGAGGAATATGCAGTTCTAAAGGATATCATAATTTCCACATCAGTGAAAAACACTCTGTCAAGTATGGGTTTGCGAACTACAAAAGGAGTGCTTCTTCATGGTCCACCTGGTACGGGAAAGACTTCTTTGGCTCAATTATGTATTTGTGATGCTGGTGTCAACCTTTTCTCTGTAAATGGAGCTGAAATTGTTAGTCAATACTATGGAGAGAGTGAGCAAGCATTGCATGAAATTTTTGATTCAGCTAGCCAAGCTGCACCTGCTGTGGTGTTCATTGATGAGTTGGATGCCATCGCCCCTGCACGCAAAGATGGAGGGGAAGAGCTATCTCATAGAATAGTTGCCACATTATTGAATTTGATGGATGGGATCAGTAGAACTGATGGGATACTTGTAATTGCTGCTACCAACAGGCCTGATAGTATTGAGCCTGCACTCAGACGGCCTGGAAGACTGGACAGGGAAATGGAAATTGGTGTCCCATCTCCTGGGCAACGATATGATATTTTACTCAACCTCCTTAGTGAAATGGAAAACTCTCTTTCGGACATGCAAATTCAACAGCTTGCTACAGTTACCCATGGTTTTGTGGGTGCTGATTTAGCCGCCCTTTGCAACGAGGCAGCCTTGGTTTGTCTGAGGCGCTATGTTAAGTTCAAGAAATCTTGTGATGATTTCCATTGCAACAGAACATCAATTGTACATGATGGTAAAATTGCAGACCCTGATGACTCGGAAGCTTTGGAAGACCAGTTTTCAAGGGATCATCCAGATTGTGCATCTTCCTCTCCCCCAGATTTGTCTGTTTCGTCAGAGAACCTACCATATTTTGGAGTCCAGAAAACAACCTCCAATAGGACAAATAATATTTGGAACGGAGTTGATGCTAGTGTTAGGAGGTCCTTTATAATGGAAGAAGAATGCATGTTGGTAGTCACTTTTGAGGACTTTGAAAAGGCTAGGATGAAAATAAGGCCTAGTGCTATGCGAGAGGTAATACTTGAGGTTCCAAGGGTTAAGTGGGAAGATGTTGGTGGCCAAAATGAGGTTAAGGCACAGCTAATGGAAGCTGTAGAATGGCCTCAAAAACATCAGGATGCTTTCAAGCGTATTGGGACCCGCCCCCCAACAGGTGTATTGTTGTTTGGACCTCCAGGTTGCAGCAAAACCCTCATGGCTCGTGCAGTAGCTTCTGAGGCAGGTCTGAATTTCCTGGCTGTTAAGGGCCCCGAACTTTTCAGCAAATGGGTTGGTGAATCTGAAAAGGCTGTAAGGTCTCTGTTTGCAAAGGCTAGGGCCAATGCTCCATCTATTATATTTTTTGATGAAATAGATGGTCTTGCTGTTATTCGTGGGAAGGAAAGTGATGGGGTTTCGGTCGCTGACAGGGTTATGAGTCAACTTCTTGTTGAATTAGATGGTTTGCACCAACGAGTTGATGTTACTGTTATTGCTGCTACAAATCGGCCTGACAAGATTGATCCTGCTCTTCTAAGACCAGGACGCTTTGATCGGCTGTTATACGTGGGACCCCCAAATGAGAGCGATCGGGCAGATATATTCCACATTCATTTGTGTAAAATTCCATTCAGTTCTGATGTCAGCATAGGGGAGCTGGCTTTCCTCACTGAAGGCTATACTGGGGCTGATATATCATTAATCTGCCGGGAAGCAGCTATTGCAGCTATTGAAGATAACCTTGATGCTTCAGAAATAACTATGGAACACCTAAAGACTGCTATTAGACAAGTACAGCCATCAGAACTCCAATCTTACCAAGAGTTATCGACAAAATTTCAACGGCTTGTGCACTCTAGTGATAAAAGAGATGAATCAGGGCTTCCATTGCGCTCAAGTAAATCAACCTGGATGCCTCTCTGGATCCTGATAACATCCATCAAGCAGTTCCTTTATTGGTTTCCTGCAGCAATTTCATGTTCCAAATCTTCCTCAAGCAGACGGACTTAG 3252 0.4222 MPSKTKKHSKSLSKLSYSDKSESPSVSSVLTPPPDLEISEEDLLRYLDEASSKCPSLIGKSAFIGRVTGVDPDSKGCKIWLSEPSMVAFNLAPGSTVSVSLASSKKKFSNGFPLSSLTDESTRHFQVDSGNKMPGEAGNYFALATVFPSCKVLKNGVRLSLNLYHTMGSPASARIVFVYLIQSQSVTGFVNGSRKSHSTTINGLSLYKCKELYLEMIPSKNGSTVNSDMQSTVQVSTETTNYQVSNGAASSPKTPVSYQSKLISPNSNQLTSPICDDSVSSLSNPNNKIFASFDITEVLGDETAKKLLQSCAASWLYSRSLLTGNLVTIPILSELCTFCVRGAIKLSPDSDNHDLTDERSHGLFSRAPDSVSHVDDACVVDRETKVYLYLPSNSSSETPQKGRPPHVELEFKNFKANVGSAVKLGGLSEEYAVLKDIIISTSVKNTLSSMGLRTTKGVLLHGPPGTGKTSLAQLCICDAGVNLFSVNGAEIVSQYYGESEQALHEIFDSASQAAPAVVFIDELDAIAPARKDGGEELSHRIVATLLNLMDGISRTDGILVIAATNRPDSIEPALRRPGRLDREMEIGVPSPGQRYDILLNLLSEMENSLSDMQIQQLATVTHGFVGADLAALCNEAALVCLRRYVKFKKSCDDFHCNRTSIVHDGKIADPDDSEALEDQFSRDHPDCASSSPPDLSVSSENLPYFGVQKTTSNRTNNIWNGVDASVRRSFIMEEECMLVVTFEDFEKARMKIRPSAMREVILEVPRVKWEDVGGQNEVKAQLMEAVEWPQKHQDAFKRIGTRPPTGVLLFGPPGCSKTLMARAVASEAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIIFFDEIDGLAVIRGKESDGVSVADRVMSQLLVELDGLHQRVDVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNESDRADIFHIHLCKIPFSSDVSIGELAFLTEGYTGADISLICREAAIAAIEDNLDASEITMEHLKTAIRQVQPSELQSYQELSTKFQRLVHSSDKRDESGLPLRSSKSTWMPLWILITSIKQFLYWFPAAISCSKSSSSRRT* 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0548 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 765 1018 IPR027417 -
Vvi8g0548 1083 ProSitePatterns AAA-protein family signature. 909 927 IPR003960 GO:0005524|GO:0016887
Vvi8g0548 1083 CDD RecA-like_CDC48_NLV2_r1-like 423 586 - -
Vvi8g0548 1083 PANTHER AAA-FAMILY ATPASE 82 1029 - -
Vvi8g0548 1083 MobiDBLite consensus disorder prediction 667 684 - -
Vvi8g0548 1083 FunFam calmodulin-interacting protein 111 isoform X1 764 939 - -
Vvi8g0548 1083 CDD RecA-like_CDC48_r2-like 778 937 - -
Vvi8g0548 1083 Gene3D - 940 1010 - -
Vvi8g0548 1083 MobiDBLite consensus disorder prediction 667 696 - -
Vvi8g0548 1083 FunFam Calmodulin-interacting protein 111 589 767 - -
Vvi8g0548 1083 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 647 IPR027417 -
Vvi8g0548 1083 Coils Coil 988 1008 - -
Vvi8g0548 1083 Gene3D - 768 1015 IPR027417 -
Vvi8g0548 1083 FunFam Putative vesicular transport protein (CDC48) 409 587 - -
Vvi8g0548 1083 SMART AAA_5 454 590 IPR003593 GO:0016887
Vvi8g0548 1083 SMART AAA_5 803 941 IPR003593 GO:0016887
Vvi8g0548 1083 Pfam ATPase family associated with various cellular activities (AAA) 458 587 IPR003959 GO:0005524|GO:0016887
Vvi8g0548 1083 Pfam ATPase family associated with various cellular activities (AAA) 807 938 IPR003959 GO:0005524|GO:0016887
Vvi8g0548 1083 Gene3D - 411 587 IPR027417 -
Vvi8g0548 1083 Pfam AAA+ lid domain 961 1006 IPR041569 -
Vvi8g0548 1083 Pfam AAA+ lid domain 613 654 IPR041569 -
Vvi8g0548 1083 MobiDBLite consensus disorder prediction 16 32 - -
Vvi8g0548 1083 FunFam spermatogenesis-associated protein 5-like protein 1 940 1022 - -
Vvi8g0548 1083 Gene3D - 589 767 - -
Vvi8g0548 1083 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0548 Vvi-Chr8 11900750 11919397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0548 1 1065 Calmodulin-binding Proteins AT3G56690 57.905 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0548 - - vvi:100256736 2057.34