Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0547 ATGAGAGAGGAGGAGTCTAATTGGTTTTCCCGATGGGAAGAGGAGCTTCCCTCTCCGGAGGAGTTGATGCCGCTCTCTCAAACCCTAATCACCCCTGATCTTGCCTTGGCCTTTGATATCCGAAACCCCAACAGCCCCCAAGCCCCACCTCCGCCTCTACCCACACCCCAGGTGGCTCCCCCTCCTCCCTCCCAGCCCAACTCTGCCCCCGAATTTGATTCCGGCGATTTGGGGTCCGGGGCTGCCGGCGACGAGCCCGCTCGCACCCTGAAGCGGCCGCGCCTCGTGTGGACGCCCCAGCTGCACAAGAGATTTGTGGACGCTGTGGCCCACTTGGGGATCAAGAATGCGGTCCCTAAGACCATAATGCAGCTCATGAGTGTTGATGGGTTGACTCGGGAGAATGTGGCCAGTCACCTCCAGAAGTATCGCCTCTACCTCAAACGCATGCAGGGACTATCTGCCGGCGGGGGCGGTGGCGGGGGAGGTGGGGGCGCCGGAGGTGGTGCGGGTTTGGCCGCCGCTGATCCGGCCACCGACCATTTGTTTGCGAGCTCTCCGGTGCCTCCCCATTTCTTGCATCCAGGGCGGGCCAGTTCTGAACATTTCTTGCCTTTTGTTCCGGTGGCTGCGTTGCAGCAGCACCATCATCACCACCAGCAGATGGCAGTGGCGGCCGCAGCTGTGGCAGCTCATCCACAGCTGCAGACTCAGTACCATCACCACAGGCAGGTGGGACATTTCGGGTCCCCTCCAAATGGGCAATTTGAGCATCCCTTTCTGCCGAGGCAGTCACAGCCTGTTCACAGGATGGGGGCACCAGTGCACAGTCCGGTACCAGCTTATGTGGAGGACCTGGAATCGGCTACAGCAACTGGAGGGAGAAGGGTGCTAACTCTTTTTCCAACTGGGGATGATTGA 921 0.6026 MREEESNWFSRWEEELPSPEELMPLSQTLITPDLALAFDIRNPNSPQAPPPPLPTPQVAPPPPSQPNSAPEFDSGDLGSGAAGDEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSAGGGGGGGGGGAGGGAGLAAADPATDHLFASSPVPPHFLHPGRASSEHFLPFVPVAALQQHHHHHQQMAVAAAAVAAHPQLQTQYHHHRQVGHFGSPPNGQFEHPFLPRQSQPVHRMGAPVHSPVPAYVEDLESATATGGRRVLTLFPTGDD* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0547 306 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 267 IPR044841 GO:0003700|GO:0006355
Vvi8g0547 306 MobiDBLite consensus disorder prediction 44 68 - -
Vvi8g0547 306 FunFam Two-component response regulator 88 151 - -
Vvi8g0547 306 MobiDBLite consensus disorder prediction 1 91 - -
Vvi8g0547 306 NCBIfam myb-like DNA-binding domain, SHAQKYF class 93 145 IPR006447 GO:0003677
Vvi8g0547 306 Gene3D - 89 151 - -
Vvi8g0547 306 MobiDBLite consensus disorder prediction 1 18 - -
Vvi8g0547 306 Pfam Myb-like DNA-binding domain 96 144 IPR001005 -
Vvi8g0547 306 SUPERFAMILY Homeodomain-like 89 149 IPR009057 -
Vvi8g0547 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 148 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0547 Vvi-Chr8 11897565 11898485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0547 1 306 G2-like Transcription Factor Family AT3G10760 60.227 5.83e-103 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi8g0547 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0547 - - vvi:100256764 498.434