Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0532 ATGGGCGTGGAAATTGTTCAGCCAAACACTTGCTTCAGAGGCTGTTGCAGCAGCGAATCAATTCCCCTTTGTCTTCCTTCTTCTTTCTACTCTCTCCTTTCCCCAATCGCCCGAGGGGCGGAGAGCGTTGTTTATGAAGCTTGTTTGGATGGGAAGAAAGTTGCTGTCAAGAAACCCATCTTGTCTACTTCTCAAGACATTGATAAATTCCACAAGGAGTTGCAACTCTTATGCAAGCTAGATCATCCGGGGATAGCGAAACTAGTTGCGGCACACGCAAAGCCTCCAAATTACATGTTCTTCTTTGAATTCTATGAATCTGGCAATCTTGCTGACAAACTACATGTGGAAGAATGGAGCCCGGGTATCGATCAGGCTTTCATGATCACCGTCCAGTTAGCAAGAGCTCTGCAATATCTACATAACCTTGGGATTATACATAGGGATGTGAAACCAGCAAATGTTCTTCTTGACAAAAAATTTTACCCACACCTGGCAGATTTTGGTCTGGCAGAATACAAGGCAGATCTGAAACAAGTTTCAACTGAAAATTGGCGATCATCTGGAAAGCCAACTGGTGGCTTCCATAAGAAGAACATGGTTGGGACACTAATTTATATGGCACCTGAAATATTGAGGAAGGAGATACATACTGAAAAATCAGATGTATACAGTTTTGGAGTATCAATTAATGAGCTACTTACTGGTGTTGTGCCATATACTGATCTTCGAGCAGAAGCTCAGGCCCACACTGTGCTCGAAATGAACTACACTGAACAGCAACTTACAGCAGCTGTGGCATCTGAAGGATTGCGACCAGTTCTTGCTGGCTTGGAGTCAGCTGCACCAGCAAGGTTACTATCATTGATACAGAGGTGTTGGGATGCAAATCCCCAAAATAGGCCTTCTTTTGATGAGATAGTAATGGAACTTGATCCAATATTGGAGCACAGGAAGACAGTAAAAGAGAAGGAAAATATCCTTGGAGAACCTTCTATTTTTCCTGCTGACCAGCACATAAATGATGCCACTAATCTTCGAACATACCAGGAAAGCATTAACTGGGTTGCTCAGGGGGAAAATTTTTCCAAGATAGCTTCTTCTGTAGCTGATTCTAGTGTTGAAATGTGGTTTGATTCTTCAAATGATCCTTTAACATACCGTCCAATACTATCTTGGGGATCCTTTGCTACGTGCGGGAGGAGGGAGACCATGGAGGATACTCACTTTCTTATGCCCAATATGTTCAATGAGGAAGATATCCATGTTTTTGGTATCTTTGATGGTCATCGAGGTGCAGCAGCGGCTGAGTTTTCAGCTCGGGCTCTTCCTGGATATTTGAAAACTCTGGGTTCCAGAAGCAGTCCTGCTGATGCATTATTGGAAGCATTTGTCAAAACAGATGTTGCATTTAGGAATGAACTGGATTCCTGTCGTAAATCTAAGGGAGTTATTCAGAAAGACTGGCATCCTGGCTGCACCGCAGTTGCTGCCCTAATAGTTAGAAACAAGCTTTTTGTTGCTAATGCTGGTGATTGCAGGACAATCTTATGTCGAGCTGGCTGTGCTTTTGCTTTAAGTAAGGACCATGTCGCAAGCTGTCTTGAGGAGCGAGAACGTGTTACCAATGCAGGGGGACAAGTCAAATGGCAAGTTGATACATGGAGGGTTGGTCCTGCTGCTCTTCAGGTTACACGTTCCATAGGTGATGATGATCTGAAGCCTGCTGTAACTGCAGAACCTGAGATAACTGAAACTATTCTGTCGGTGGAGGATGAATTCCTGGTAATGGCAAGCGATGGGCTCTGGGATGTTGTGAGCAATGCAGAGGTTGTGAGCATAATCAGGGACACTGTTAAAGAGCCTGGAATGTGCTCCAAGAGACTGGCAACCGAAGCAGCTGAACGTGGTAGCAAAGATAACATCACTGTCATCGTCATCTTCCTGCGCCCAGTTTCTACGGCAGAAAGAATTTACTAG 1980 0.4434 MGVEIVQPNTCFRGCCSSESIPLCLPSSFYSLLSPIARGAESVVYEACLDGKKVAVKKPILSTSQDIDKFHKELQLLCKLDHPGIAKLVAAHAKPPNYMFFFEFYESGNLADKLHVEEWSPGIDQAFMITVQLARALQYLHNLGIIHRDVKPANVLLDKKFYPHLADFGLAEYKADLKQVSTENWRSSGKPTGGFHKKNMVGTLIYMAPEILRKEIHTEKSDVYSFGVSINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQLTAAVASEGLRPVLAGLESAAPARLLSLIQRCWDANPQNRPSFDEIVMELDPILEHRKTVKEKENILGEPSIFPADQHINDATNLRTYQESINWVAQGENFSKIASSVADSSVEMWFDSSNDPLTYRPILSWGSFATCGRRETMEDTHFLMPNMFNEEDIHVFGIFDGHRGAAAAEFSARALPGYLKTLGSRSSPADALLEAFVKTDVAFRNELDSCRKSKGVIQKDWHPGCTAVAALIVRNKLFVANAGDCRTILCRAGCAFALSKDHVASCLEERERVTNAGGQVKWQVDTWRVGPAALQVTRSIGDDDLKPAVTAEPEITETILSVEDEFLVMASDGLWDVVSNAEVVSIIRDTVKEPGMCSKRLATEAAERGSKDNITVIVIFLRPVSTAERIY* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0532 659 SUPERFAMILY Protein kinase-like (PK-like) 25 322 IPR011009 -
Vvi8g0532 659 Pfam Protein kinase domain 31 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0532 659 FunFam Protein kinase and PP2C-like domain-containing protein 20 345 - -
Vvi8g0532 659 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 384 653 - -
Vvi8g0532 659 Gene3D Transferase(Phosphotransferase) domain 1 23 337 - -
Vvi8g0532 659 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 28 318 - -
Vvi8g0532 659 Gene3D - 385 654 IPR036457 -
Vvi8g0532 659 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Vvi8g0532 659 ProSiteProfiles Protein kinase domain profile. 30 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0532 659 SUPERFAMILY PP2C-like 386 651 IPR036457 -
Vvi8g0532 659 Pfam Protein phosphatase 2C 396 642 IPR001932 -
Vvi8g0532 659 ProSiteProfiles PPM-type phosphatase domain profile. 392 649 IPR001932 -
Vvi8g0532 659 SMART PP2C_4 382 647 IPR001932 -
Vvi8g0532 659 SMART serkin_6 30 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0532 659 CDD PP2Cc 394 649 IPR001932 -
Vvi8g0532 659 SMART PP2C_SIG_2 407 649 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0532 Vvi-Chr8 11715394 11728186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0532 99 659 PP2C-type Phosphatase Gene Family AT2G40860 68.327 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Vvi8g0532 Pkinase 3.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0532 - - vvi:100253351 1314.29