Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0531 ATGACGTTGGCGACGTCTCCTTGCGGAGGTGCTCAGGAGAAGAAGGAGGCTCAGGGTCAAGAAGGCCCCGTACGGGAAGACTTGGATCATGCGCTGGACTTGAGGCTGTCCAGTGATGTGGTGGGGGAAAGGGAGCATGTTTCCAAGCATGATGGGCCTAAGGGGTCTGAATCGGCCAACGGGGTGGATCAGAATGGGGACGAGAAGAGGGACTTCTATTGCAAATACTGCAATAAGAAGTTTGCTAATTCGCAGGCGTTGGGTGGGCACCAGAATGCCCATAAGCGTGAGCGGGGCTCGACGAAAAAGGACAAAGTGGACCAGGAAGCCCTTGCACACATTGAATCTCATCTCTACTCTTATTCCTCCATTGTACCCTACAATCGTCACTATGGTTCTTACAGCAAGCCCTTAGGGATTCAGTCGCAGTCCATGATCAACAAGCCCCTCCACTCTTGGTCCCGAGGTGGACTCGGATACGGCTATGGTGGAGTTGGAGGGTGGTCTAGGTACTCCATGATGAACCACGGCCAGTTTCCTATGATGAACTGTACACGTCAACCCAGCATGGTGAACCAGCAATATGGAACGCAGCCGTCTCCAAGGACCAACAGCTACTGGGGTGGAAGTGGAGTTGGCGTTGGCGGTGGCGGATACCAACAACCACCACCACCACCATCACAGGCCAGACAGTTCAACATTGCTGGATATCAACAACCACCGCCGCCGCAGAATAGAGGCTTCAACCTCAGTGGAACGACAGCGTTTCGGCCTCCCTTTGAGGGCGCTTATTTGCAGATAGGAACTTCAAGGTCTGTAGATAACAGAATTGATGGTTCTGCCGAGTATCGGGCAGGACAAAGAGGCAGCGTTGCCGAGAATCCAGGACAAGAAGTAGGAGGTAGCCTTTTAGAGAAAGGGAAGCAACAACAAGCCAAAGACATTGACTTGACCCTTAAGCTATGA 966 0.5259 MTLATSPCGGAQEKKEAQGQEGPVREDLDHALDLRLSSDVVGEREHVSKHDGPKGSESANGVDQNGDEKRDFYCKYCNKKFANSQALGGHQNAHKRERGSTKKDKVDQEALAHIESHLYSYSSIVPYNRHYGSYSKPLGIQSQSMINKPLHSWSRGGLGYGYGGVGGWSRYSMMNHGQFPMMNCTRQPSMVNQQYGTQPSPRTNSYWGGSGVGVGGGGYQQPPPPPSQARQFNIAGYQQPPPPQNRGFNLSGTTAFRPPFEGAYLQIGTSRSVDNRIDGSAEYRAGQRGSVAENPGQEVGGSLLEKGKQQQAKDIDLTLKL* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0531 321 MobiDBLite consensus disorder prediction 284 321 - -
Vvi8g0531 321 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Vvi8g0531 321 SUPERFAMILY beta-beta-alpha zinc fingers 69 98 IPR036236 -
Vvi8g0531 321 MobiDBLite consensus disorder prediction 91 105 - -
Vvi8g0531 321 Gene3D Classic Zinc Finger 45 122 - -
Vvi8g0531 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 99 IPR013087 -
Vvi8g0531 321 MobiDBLite consensus disorder prediction 18 53 - -
Vvi8g0531 321 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 28 321 IPR044246 GO:0009788
Vvi8g0531 321 MobiDBLite consensus disorder prediction 1 67 - -
Vvi8g0531 321 MobiDBLite consensus disorder prediction 86 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0531 Vvi-Chr8 11710332 11711297 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0531 68 183 C2H2 Transcription Factor Family AT5G25160 40.336 6.03e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi8g0531 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0531 - - vvi:104879940 100.138