Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0530 ATGATGTCTGCTCAGGAAGAAATGAGTCCTAAGGGTTGTTGCTCTCTGAAGTTGGCAGAGACTCCATCCAATGAGGAAAAGGAGAAGCATGCCATTGATGATGAGTCCTTGGTTCGAGAAGAACACGAAAGAGATATGAAGTCGAATCAAGCACTGAATCTCATCAAGATATCTGGTGCTGCTGCAGTAGTGGAACATGGACAGGGTTGTAAGCTCGATGATGGCCCCGAGGAGAAATCCCCAAATGGATTCAAATCCTCCAATAGGGTGGTTGAGAATATGGTTATTGAATATGTAGGGGCGAGGAGGGATTTATATTGCAAATATTGCAATAAGAAATTCTCGAATTCTCAGGCATTGGGTGGCCACCAAAATGCCCACAAACGTGAGCGAGCCCTTGAAAGAAAGGAAAAAATGGACGAGATCACTCTTGCAAATGTAGCGTCTTGCTTCTACCCTCCTTTAACCCTTTCATCATACTATAGTCGTCATGCTTCTCTGAAGAGGCCCCTTGGGGTTCGCTCCCAGTCAGCCATACATAAGCCCTTCAACTCTTGGTCCTGCGGTGGAGTTGGACATGGCCATGGAGGAGCTGTAGGGTGGTGGTCAACCTACTCCAATCTAAACCGCCAAATCTCAACCATCAGCCAACAACCAACCCTTATGGTGAATCCACAACCCCCCCAAGTGAACCAGCATTATAGAACGCAGCAGTACTCTCCAAGTATCGACAGTTATTGGAGTAGAGTTGGTGTTTTTGGGCATCAACCACCATCAGAGACTAGAACTGATCATTTCAACCTCGGTGGAAGAATGGCATTTCACCCTCCTTTTGAGGGTACTTCTTCTCAGATAGGAACTTCATCAAGCCCCGCCGATAATAGGAGTGGCAACGCTGATCATCGCCCAGGTGGCGTCGTTCCAGAGAAAGAGAAGGGAGAAGCTTTCAAACTTGACTTGACCCTTGCGCTCTGA 975 0.4728 MMSAQEEMSPKGCCSLKLAETPSNEEKEKHAIDDESLVREEHERDMKSNQALNLIKISGAAAVVEHGQGCKLDDGPEEKSPNGFKSSNRVVENMVIEYVGARRDLYCKYCNKKFSNSQALGGHQNAHKRERALERKEKMDEITLANVASCFYPPLTLSSYYSRHASLKRPLGVRSQSAIHKPFNSWSCGGVGHGHGGAVGWWSTYSNLNRQISTISQQPTLMVNPQPPQVNQHYRTQQYSPSIDSYWSRVGVFGHQPPSETRTDHFNLGGRMAFHPPFEGTSSQIGTSSSPADNRSGNADHRPGGVVPEKEKGEAFKLDLTLAL* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0530 324 MobiDBLite consensus disorder prediction 280 296 - -
Vvi8g0530 324 ProSitePatterns Zinc finger C2H2 type domain signature. 107 127 IPR013087 -
Vvi8g0530 324 Gene3D Classic Zinc Finger 103 149 - -
Vvi8g0530 324 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 21 323 IPR044246 GO:0009788
Vvi8g0530 324 MobiDBLite consensus disorder prediction 275 312 - -
Vvi8g0530 324 MobiDBLite consensus disorder prediction 21 39 - -
Vvi8g0530 324 ProSiteProfiles Zinc finger C2H2 type domain profile. 105 132 IPR013087 -
Vvi8g0530 324 MobiDBLite consensus disorder prediction 1 39 - -
Vvi8g0530 324 SUPERFAMILY beta-beta-alpha zinc fingers 104 133 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0530 Vvi-Chr8 11698586 11699560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0530 103 182 C2H2 Transcription Factor Family AT1G80730 41.573 5.27e-13 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi8g0530 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0530 - - cic:CICLE_v10012428mg 90.8929