Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0529 ATGGTGTCTGCTGTGCAGGAAATGAGTTCTGAGAAGGTGGCAATGAACTCTCCACCCAGAGACAGTGAGGAGAAGGAGGCCATGGAGGAGTCTGGGAGCAATCAAAAACCCAGAACAAGTGCAGAGTCGAATGATCCAGCTCTGGATCTGAAACTCTCTAATGATCATGTGCAGGACCAAGGAGGTGATCGTTCAAAGATTGCAGCACTCCCCGGGAATATTAATGGGCCCAAACAAAATTCTCCAACTGCATCTCAGTCATCGAATGAGGTGGAAATGGATGCAGATCCACCCCATGAAGGGGAGAGAAGGAACTACTACTGTAAGTATTGCAATAAGATGTTTTCTAACTCACAGGCGTTGGGTGGGCACCAAAACGCCCACAAACGCGAGCGAGCTGCGGCCAAAAAGGAGAAGGGATTAGAGGAGGCTGCTCGTGCAGCCATAGAATATCGCCTTTATCCTTTTTCCACCATTTCACCCTACAATAGCCGCTATGGCTCTTTCAGCAGGCCCCTTGGGGTTCAAAGACAGTCCTTGATACATAAGCCCTTCAACTCCGGGCTCCATGGTGGAATTGGATATGGCAGTACTGGAGGAGTTGGAGGGCGGTCTGGATACTCCAATCATAATCGCCAGTTCCCTATCACAAACCGACCAACCCCTATGGTGAACCACAAATATGGGATACAGCAGCCTCGGAATATGAGCAATTACTGGGCTAGGGGCATGTCTGTTGGTGTCGGCGGATATCAACCACCACCACTACCACAGGCTAGACCCTTCAACATTGGTGGATATCAGCCACCACCGCAGCCTAGAGCCTTCAATATTGGTGGATCCACTGCAAATCCCCCTCCTTATGCTTGGCCGATGGGTGCTTCAAGGCCTGCTGATCACAGAATTGCCAGCGCTGATCATCACCCAGGCGGTGGCCTTTTACAGTTTCAGAGACACGAGGCGCAAGGTGGTGTTCTAGCGACCGAGAAACAAAATGCCCCGGCGATTGATTTGACCCTTAGGCTCTGA 1029 0.5092 MVSAVQEMSSEKVAMNSPPRDSEEKEAMEESGSNQKPRTSAESNDPALDLKLSNDHVQDQGGDRSKIAALPGNINGPKQNSPTASQSSNEVEMDADPPHEGERRNYYCKYCNKMFSNSQALGGHQNAHKRERAAAKKEKGLEEAARAAIEYRLYPFSTISPYNSRYGSFSRPLGVQRQSLIHKPFNSGLHGGIGYGSTGGVGGRSGYSNHNRQFPITNRPTPMVNHKYGIQQPRNMSNYWARGMSVGVGGYQPPPLPQARPFNIGGYQPPPQPRAFNIGGSTANPPPYAWPMGASRPADHRIASADHHPGGGLLQFQRHEAQGGVLATEKQNAPAIDLTLRL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0529 342 ProSitePatterns Zinc finger C2H2 type domain signature. 108 128 IPR013087 -
Vvi8g0529 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 106 133 IPR013087 -
Vvi8g0529 342 MobiDBLite consensus disorder prediction 74 92 - -
Vvi8g0529 342 MobiDBLite consensus disorder prediction 1 100 - -
Vvi8g0529 342 MobiDBLite consensus disorder prediction 1 16 - -
Vvi8g0529 342 MobiDBLite consensus disorder prediction 17 32 - -
Vvi8g0529 342 Coils Coil 340 342 - -
Vvi8g0529 342 Gene3D Classic Zinc Finger 83 152 - -
Vvi8g0529 342 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 220 IPR044246 GO:0009788
Vvi8g0529 342 SUPERFAMILY beta-beta-alpha zinc fingers 103 133 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0529 Vvi-Chr8 11691926 11692954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0529 19 192 C2H2 Transcription Factor Family AT5G10970 31.720 6.13e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi8g0529 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0529 - - jcu:105636189 96.2857