Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0527 ATGGGTATGAGCGCACAACCCATATCAAAGGAAAGGAAGGCTGCTCCTGTCATTATCCCTGAAAAGCGAAAACCAGTAACTGAAGTGGATACAAGGTTTGTCAGGTGTACGGTGTTTTCGAAGCTGGTGTCAGAGTGCTTGAGTGAGAAGTGGCTGTCTACGCCAATACACGTTTCAATTTTTTTCCCTTTGCTTTGTCTCGCTCGACGCCTTCACATCGTCCCCGTTTTTTTTTTATGGTCTTCGTCATATTCATCTTCAATGGATGAAACTATGGGGAGTATGCCTTCTCAAAAAACTCTAGGGAATTATAGATTGGGAAAGACACTCGGAATTGGGGCCTTTGGTAAAGTGAAGGTTGCACTTCATACAACAACAAAGCTAAAAGTTGCTATTAAGATCCTTGATCGCCAATCTATTGATGATTCGACGGCAGACAGAGTGAAACGAGAGATTAATATATTGAGGTTATTTTCACATCCTCATATAGTTCGTCTTTATGAGGTCATAGAGACAAGGACAAAAATTTATGTTGTCATGGAGTACATGAATTCTGGTGAGCTATTTGATTATATTACAGAGAATGATAGACTCCAAGAGGATGAGGCTCGCCACTTTTTTCAACAGATTATTTCAGGTGTTGAATGTTGCCATGTCAATATGGTGGTTCACCGAGACCTCAAGCCAGAGAATTTACTCTTGGATACAAAACGCAATGTCAAAGTTGCAGACTTTGGACTCAGCAATGTGATGCGTGATGGTCATTTTCTCAAAACAAGCTGTGGAAGTCCAAATTATGCTGCTCCTGAGGTTATTTCTGAACAACTATATTCTGGTCCTGAGGTTGATGTTTGGAGTTGTGGTGTCATTTTATTTGCTCTTCTCTGTGGAAGGCTTCCTTTTGATGCTGATAGTCTTTCGGGTTTATATGCAAAAATAAAGAGTGGAATATACACATTCCCAAATCATTTATCTCGTGCTGCTCGGGATTTGATTGCTCGGATACTTGTAGTAGATCCGATCAAACGTATTTCAATTCCTGAGATACGCCGGCATCCTTGGTTTCAACAGCATCTTCCCAAATACATAGCTCTGCGCACAATAGATGCCATATACACTACAAATAAGGTTGATGAGGAAATTGTCCAACAGGTGGTAAAGATAGGCTTTGACATTAATGAAGTGATCCAGTCTCTTCAAAATAGACTGCAAAATGAGGCAACAGTTGCATATCATTTGCTGTTGGACAATCATTTTCGAATCCATTGCAGTTACCTTAAAAATGAATTTATAGAATCCTTGCCACAGGATCCCAACCCCACTGATCATCCTGAAATGCAAATGAGTTCACTGGCTCCCATGCAACGACAATGGGCACTTGGATTGAAGTCTCAAGCACGTCCCATCGAAACAATGACAACTGTTTTGAAGGTTTTTGAGAGATTGAATGTTAAATGGAAGAAGATAGGTCCTTACAACATGAAATGTCTTTGGATACCACCATTAGCTGCCTATCCCAAGTTGACAGTTGGCAATGATCCTGCACAAGATCACATCTATAGTGTGGATCCATCAATTATGGCCATGAACAAAAGAGCAATTAGATCGCAAAATGCTGTGAAGTTTGAAATTCAGGTAAGACTTTGTAGTGAAAGAATATGTCAAAAATCTAGGTATCCAATGCAAATACTTACCAATTGA 1701 0.4004 MGMSAQPISKERKAAPVIIPEKRKPVTEVDTRFVRCTVFSKLVSECLSEKWLSTPIHVSIFFPLLCLARRLHIVPVFFLWSSSYSSSMDETMGSMPSQKTLGNYRLGKTLGIGAFGKVKVALHTTTKLKVAIKILDRQSIDDSTADRVKREINILRLFSHPHIVRLYEVIETRTKIYVVMEYMNSGELFDYITENDRLQEDEARHFFQQIISGVECCHVNMVVHRDLKPENLLLDTKRNVKVADFGLSNVMRDGHFLKTSCGSPNYAAPEVISEQLYSGPEVDVWSCGVILFALLCGRLPFDADSLSGLYAKIKSGIYTFPNHLSRAARDLIARILVVDPIKRISIPEIRRHPWFQQHLPKYIALRTIDAIYTTNKVDEEIVQQVVKIGFDINEVIQSLQNRLQNEATVAYHLLLDNHFRIHCSYLKNEFIESLPQDPNPTDHPEMQMSSLAPMQRQWALGLKSQARPIETMTTVLKVFERLNVKWKKIGPYNMKCLWIPPLAAYPKLTVGNDPAQDHIYSVDPSIMAMNKRAIRSQNAVKFEIQVRLCSERICQKSRYPMQILTN* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0527 566 SMART uba_6 378 415 IPR015940 -
Vvi8g0527 566 FunFam Non-specific serine/threonine protein kinase 88 184 - -
Vvi8g0527 566 FunFam CAMK family protein kinase 97 429 - -
Vvi8g0527 566 SMART serkin_6 104 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0527 566 SUPERFAMILY KA1-like 412 546 IPR028375 -
Vvi8g0527 566 Gene3D Kinase associated domain 1, KA1 461 551 - -
Vvi8g0527 566 ProSitePatterns Protein kinases ATP-binding region signature. 110 133 IPR017441 GO:0005524
Vvi8g0527 566 Gene3D Transferase(Phosphotransferase) domain 1 95 433 - -
Vvi8g0527 566 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 88 434 - -
Vvi8g0527 566 SUPERFAMILY Protein kinase-like (PK-like) 100 391 IPR011009 -
Vvi8g0527 566 CDD UBA_SnRK1_plant 377 417 - -
Vvi8g0527 566 CDD STKc_AMPK_alpha 101 355 - -
Vvi8g0527 566 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 376 416 IPR015940 -
Vvi8g0527 566 ProSiteProfiles Protein kinase domain profile. 104 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0527 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Vvi8g0527 566 Pfam Protein kinase domain 104 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0527 Vvi-Chr8 11655208 11662340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0527 99 369 CBL-interacting serine-threonine protein kinases AT4G24400 50.549 2.36e-90 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Vvi8g0527 Pkinase 2.1e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0527 K07198 - vvi:100243154 924.85