Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g0513 | ATGTCGAGTGGTGGAAACACTCATTGGTGTTACAGATGCCGGCGGCCAGTTCGACTCCGAGGCCGAGATGCAGTTTGTCCCAACTGTAATGGAGGATTTATTCAAGAACTGAATGATATGGTGAGTATTAGTCCAATAGATTTCCTTGGACTGGACACTGATGAAGATCGTGACCGTAGGTTCGGAATTATGGAAGCATTCTCAGCTTTTATGAGGCATAGATTGGCAGGGATAAACCAAAACCATGATATCAGAGGGAGATCGGGCTCTGTTCCTGAACACGGTCAGGGGTTCCCATCATTGTTTTTTGGGGGTCAGATTCCTCTTAGGTTATCTGACACTGGAGGAATTGAAGTTCTTTGGAATGGACCCCATGGAATTGGTGCGACACGGGGTAATGTTGGTGACTACTTTATAGGTCCTGGACTGGAAGAATTGTTTGAGCAGCTTTCTGTTAATGATAGACGGGGTCCTCCTCCAGCATCCAGATCTTCGATTGATGCAATGCCCACAATTAAGATCACACAGAAACATCTTCGCTCAGATTCTCATTGCCCAGTTTGCAAAGACAGATTTGAGTTGGGTTCCGAAGCAAGGAAAATGCCATGTAATCATATATATCATTCAGATTGTATTGTCCCATGGCTGGTTCAGCACAACTCTTGTCCTGTTTGCCGCCATGAATTGCCACCTCAGGGATCGAGCCGTGGTCATAGTCATCAAACCTCAAGCAGTGGAAATAGAAGTAGCAGTTATAGTAGTAATTCCAATGGAAGGGAGAACGGTAGGGATAATCAGGGAAGACGAAGTGCATGGTCGCTTTTGTGGCCATTCCGCTCATCTAACTCTAGTTCTCACCACAACGAAACAGGTGGAAGCAGCTCAGCAACTGTGCATGAAGATATTCACCAACAGACGGGGTATCATGGATGGCCTTTTGATTAA | 945 | 0.4571 | MSSGGNTHWCYRCRRPVRLRGRDAVCPNCNGGFIQELNDMVSISPIDFLGLDTDEDRDRRFGIMEAFSAFMRHRLAGINQNHDIRGRSGSVPEHGQGFPSLFFGGQIPLRLSDTGGIEVLWNGPHGIGATRGNVGDYFIGPGLEELFEQLSVNDRRGPPPASRSSIDAMPTIKITQKHLRSDSHCPVCKDRFELGSEARKMPCNHIYHSDCIVPWLVQHNSCPVCRHELPPQGSSRGHSHQTSSSGNRSSSYSSNSNGRENGRDNQGRRSAWSLLWPFRSSNSSSHHNETGGSSSATVHEDIHQQTGYHGWPFD* | 315 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g0513 | 314 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 103 | 230 | - | - | |
Vvi8g0513 | 314 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 232 | IPR013083 | - | |
Vvi8g0513 | 314 | SUPERFAMILY | RING/U-box | 165 | 232 | - | - | |
Vvi8g0513 | 314 | CDD | RING-H2_RNF126-like | 185 | 226 | - | - | |
Vvi8g0513 | 314 | FunFam | E3 ubiquitin-protein ligase RING1-like | 148 | 232 | - | - | |
Vvi8g0513 | 314 | SMART | ring_2 | 185 | 225 | IPR001841 | - | |
Vvi8g0513 | 314 | Pfam | zinc-ribbon | 6 | 37 | IPR039525 | GO:0061630 | |
Vvi8g0513 | 314 | ProSiteProfiles | Zinc finger RING-type profile. | 185 | 226 | IPR001841 | - | |
Vvi8g0513 | 314 | MobiDBLite | consensus disorder prediction | 231 | 268 | - | - | |
Vvi8g0513 | 314 | MobiDBLite | consensus disorder prediction | 234 | 261 | - | - | |
Vvi8g0513 | 314 | Pfam | Ring finger domain | 184 | 226 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi8g0513 | Vvi-Chr8 | 11540877 | 11541821 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi8g0513 | 54 | 230 | C3H Transcription Factor Family | AT5G01980 | 37.569 | 8.82e-29 | 113 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g0513 | K11982 | - | vvi:100265395 | 638.647 |