Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0513 ATGTCGAGTGGTGGAAACACTCATTGGTGTTACAGATGCCGGCGGCCAGTTCGACTCCGAGGCCGAGATGCAGTTTGTCCCAACTGTAATGGAGGATTTATTCAAGAACTGAATGATATGGTGAGTATTAGTCCAATAGATTTCCTTGGACTGGACACTGATGAAGATCGTGACCGTAGGTTCGGAATTATGGAAGCATTCTCAGCTTTTATGAGGCATAGATTGGCAGGGATAAACCAAAACCATGATATCAGAGGGAGATCGGGCTCTGTTCCTGAACACGGTCAGGGGTTCCCATCATTGTTTTTTGGGGGTCAGATTCCTCTTAGGTTATCTGACACTGGAGGAATTGAAGTTCTTTGGAATGGACCCCATGGAATTGGTGCGACACGGGGTAATGTTGGTGACTACTTTATAGGTCCTGGACTGGAAGAATTGTTTGAGCAGCTTTCTGTTAATGATAGACGGGGTCCTCCTCCAGCATCCAGATCTTCGATTGATGCAATGCCCACAATTAAGATCACACAGAAACATCTTCGCTCAGATTCTCATTGCCCAGTTTGCAAAGACAGATTTGAGTTGGGTTCCGAAGCAAGGAAAATGCCATGTAATCATATATATCATTCAGATTGTATTGTCCCATGGCTGGTTCAGCACAACTCTTGTCCTGTTTGCCGCCATGAATTGCCACCTCAGGGATCGAGCCGTGGTCATAGTCATCAAACCTCAAGCAGTGGAAATAGAAGTAGCAGTTATAGTAGTAATTCCAATGGAAGGGAGAACGGTAGGGATAATCAGGGAAGACGAAGTGCATGGTCGCTTTTGTGGCCATTCCGCTCATCTAACTCTAGTTCTCACCACAACGAAACAGGTGGAAGCAGCTCAGCAACTGTGCATGAAGATATTCACCAACAGACGGGGTATCATGGATGGCCTTTTGATTAA 945 0.4571 MSSGGNTHWCYRCRRPVRLRGRDAVCPNCNGGFIQELNDMVSISPIDFLGLDTDEDRDRRFGIMEAFSAFMRHRLAGINQNHDIRGRSGSVPEHGQGFPSLFFGGQIPLRLSDTGGIEVLWNGPHGIGATRGNVGDYFIGPGLEELFEQLSVNDRRGPPPASRSSIDAMPTIKITQKHLRSDSHCPVCKDRFELGSEARKMPCNHIYHSDCIVPWLVQHNSCPVCRHELPPQGSSRGHSHQTSSSGNRSSSYSSNSNGRENGRDNQGRRSAWSLLWPFRSSNSSSHHNETGGSSSATVHEDIHQQTGYHGWPFD* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0513 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 103 230 - -
Vvi8g0513 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Vvi8g0513 314 SUPERFAMILY RING/U-box 165 232 - -
Vvi8g0513 314 CDD RING-H2_RNF126-like 185 226 - -
Vvi8g0513 314 FunFam E3 ubiquitin-protein ligase RING1-like 148 232 - -
Vvi8g0513 314 SMART ring_2 185 225 IPR001841 -
Vvi8g0513 314 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Vvi8g0513 314 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Vvi8g0513 314 MobiDBLite consensus disorder prediction 231 268 - -
Vvi8g0513 314 MobiDBLite consensus disorder prediction 234 261 - -
Vvi8g0513 314 Pfam Ring finger domain 184 226 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0513 Vvi-Chr8 11540877 11541821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0513 54 230 C3H Transcription Factor Family AT5G01980 37.569 8.82e-29 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0513 K11982 - vvi:100265395 638.647