Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0491 ATGGAGCAAAGTTTGGGTTCAGACTCAGGTCCTGCTGATAAATCTAGGGTTTTGAATGTGAAGCCATTGCGATGTTTGGTGCCAATATTCCCATCTCCACCAAACTTTTCTCCATTTTCTCCAGGGCAATCTGCCCCTTTTGTGTGTGCCAATCCATCAGGTCCTTTTCCATCTGGGTTTGCTCCCTTCTACCCCTTTTTCAGTCCTACAGACTCTCAAAGGCCACCTGAACAAAATTCACAAACTCCATTTGGTGTCCACAATCAACCTGGGCCTTTTGGCTTCAACAACCCAATTCCAGGGGCAGTTCCAATAACTTCATTTAGAACACCCCCTCCGCCACCCCCACCAGGAGTGGCAGCAAATGGAGATACAGGACCATCGAGGCGGAATTATCAGACTCACACCACTGGTATTCAATCACAATCTCAAAGTGAGGAGGCAGATGACAATGAGTACAGTGAGACCCCAAATCAGAATGCCCAGTATCTGAGCAGTTTCAGCATGCATGTTACTGATGCAGAACGTACAAGTAAGGCACAGAGGTCAAAGAGTAAGTCTCAGAAGAGAGGAAGAAAAGGCCAAGAGGTTAATTTTTCCTCACCTGAAGTTGATGTGGAGTTAATCATCAGTAATATTCTTAATTCATGTAATCTTATGGCATTTGATACATTCCGACGGGCTGATGGTGACAAGGAATCAGTTGGATATATACTTATGGTATATGACTTGCTTCGAAGAAGGATTACACAAATTGAAGATGGGAAGGAAGCAACACCTGGGGTAACTAGACGACCCGACTTAAGATCCGGTACAATCTTGATGAATAAAGGGATCCGGACAAATATCAAGAAGAGAATTGGACTTGTTCCAGGTGTTGAAGTTGGGGATATTTTCTTTTTCAGGATGGAAATGTGCTTGGTAGGGTTGCATGCTCCATGTATGGCTGGGATTGATTACATGGGTCTCAAGATCAGTCTGGAGGAAGAGCCTGTGGCTGTCAGCATTGTTTCATCTGGAGGATATGAGGACAATGTGGAGGATGGGGATGTGTTGATTTACAGTGGCCAAGGTGGGAATATTTACAGGAAGGATAAGCAAATAATTGATCAGAAGCTTGAAAGGGGGAATCTTGCTTTGGAGAAAAGTTTGCATCGGGGTAATGAGGTGAGAGTCATTAGGGGTCTAAGGGATGTGGTGAATCCAACAGGGAAAGTATATGTGTATGATGGTCTCTATAAGATTCAGGAGTCGTGGGTGGAGAAAGGGAAAGCAGGTTGCAATGTTTTTAAGTATAAATTGGTTAGATTGCCTGGTCAGCCAGAGGCATTCATTACCTGGAAGTCAATTCAACAATGGAAGGAAGGTCTTTCTTCTAGAGCTGGGGTTATTCTGCCAGACCTTACTTCAGGGGCAGAAAATTTACCTGTTTCCCTTGTAAATGATGTTGATGATGAAAAGGGGCCTGCATACTTCACATATTTTCCTAGTCTTAGATATTCAAAACCAGTAAATTTAACAGAACCTTCTTTTAGCTGTAATTGCCAAGGTGGATGTCTTCCTGGGAACTCCAACTGCTCCTGCATTAAAAAAAATGGAGGCTACATCCCATATAATGTAGCTGGGGTTCTTGTGAACAACAAATCCTTGATATATGAGTGTGGTCCTTGTTGCTCCTGCCCTATTAATTGCCGAAACCGAATTTCCCAAGCAGGTTTGAAAGTCCGCTTGGAAGTTTTCAAAACTAAGGATAAAGGTTGGGGTCTGAGGTCTTGGGATCCCATCCGTGCAGGAGCTTTTATTTGTGAATATGCAGGGGAAGTTATCAATGACTGTAAAGTGGAAGAACTTGGGAGTGAAAGTGAAGATGATTATATCTTTGATGCTACACGCACTTATCAACCTCTAGGAGTTTTGCCTGGTGATTCTAATAAGGCTCACCAGGTCCCATTTCCCCTAATAATAAGTGCAAAAAATGTTGGGAATGTAGCTCGCTTTATGAACCACAGTTGCTCTCCAAATGTGTTCTGGCAGCCAGTCTTGCGTGAAAGCAACAGTGAATCTTATCTTCATATAGCGTTTTTTGCTATCAGACACATTCCTCCAATGACAGAGTTGACATATGATTATGGGATCACCCAGTCGGGGAAAGCAGATGAGAGGAAGAAAAGATGCCTATGTGGGTCATTAAAGTGCAGAGGGCATTTTTACTAG 2214 0.4322 MEQSLGSDSGPADKSRVLNVKPLRCLVPIFPSPPNFSPFSPGQSAPFVCANPSGPFPSGFAPFYPFFSPTDSQRPPEQNSQTPFGVHNQPGPFGFNNPIPGAVPITSFRTPPPPPPPGVAANGDTGPSRRNYQTHTTGIQSQSQSEEADDNEYSETPNQNAQYLSSFSMHVTDAERTSKAQRSKSKSQKRGRKGQEVNFSSPEVDVELIISNILNSCNLMAFDTFRRADGDKESVGYILMVYDLLRRRITQIEDGKEATPGVTRRPDLRSGTILMNKGIRTNIKKRIGLVPGVEVGDIFFFRMEMCLVGLHAPCMAGIDYMGLKISLEEEPVAVSIVSSGGYEDNVEDGDVLIYSGQGGNIYRKDKQIIDQKLERGNLALEKSLHRGNEVRVIRGLRDVVNPTGKVYVYDGLYKIQESWVEKGKAGCNVFKYKLVRLPGQPEAFITWKSIQQWKEGLSSRAGVILPDLTSGAENLPVSLVNDVDDEKGPAYFTYFPSLRYSKPVNLTEPSFSCNCQGGCLPGNSNCSCIKKNGGYIPYNVAGVLVNNKSLIYECGPCCSCPINCRNRISQAGLKVRLEVFKTKDKGWGLRSWDPIRAGAFICEYAGEVINDCKVEELGSESEDDYIFDATRTYQPLGVLPGDSNKAHQVPFPLIISAKNVGNVARFMNHSCSPNVFWQPVLRESNSESYLHIAFFAIRHIPPMTELTYDYGITQSGKADERKKRCLCGSLKCRGHFY* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0491 737 Pfam Pre-SET motif 469 567 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi8g0491 737 Gene3D - 271 458 IPR036987 -
Vvi8g0491 737 SMART preset_2 465 559 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi8g0491 737 SUPERFAMILY SET domain 474 734 IPR046341 -
Vvi8g0491 737 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 142 737 IPR025794 GO:0016571
Vvi8g0491 737 ProSiteProfiles SET domain profile. 575 711 IPR001214 GO:0005515
Vvi8g0491 737 ProSiteProfiles Pre-SET domain profile. 511 572 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vvi8g0491 737 SMART set_7 575 717 IPR001214 GO:0005515
Vvi8g0491 737 MobiDBLite consensus disorder prediction 71 87 - -
Vvi8g0491 737 ProSiteProfiles YDG domain profile. 288 436 IPR003105 -
Vvi8g0491 737 MobiDBLite consensus disorder prediction 64 157 - -
Vvi8g0491 737 MobiDBLite consensus disorder prediction 172 198 - -
Vvi8g0491 737 SUPERFAMILY PUA domain-like 272 458 IPR015947 -
Vvi8g0491 737 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 128 729 - -
Vvi8g0491 737 MobiDBLite consensus disorder prediction 105 121 - -
Vvi8g0491 737 Gene3D SET domain 459 737 IPR046341 -
Vvi8g0491 737 MobiDBLite consensus disorder prediction 126 147 - -
Vvi8g0491 737 Pfam SET domain 586 711 IPR001214 GO:0005515
Vvi8g0491 737 ProSiteProfiles Post-SET domain profile. 721 737 IPR003616 -
Vvi8g0491 737 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 271 455 - -
Vvi8g0491 737 Pfam SAD/SRA domain 287 440 IPR003105 -
Vvi8g0491 737 SMART G9a_1 283 440 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0491 Vvi-Chr8 11295590 11297803 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0491 13 736 Su(var)3-9 homologs AT1G73100 48.378 0.0 659
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi8g0491 SAD_SRA 5.3e-51 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0491 K24405 - vvi:100263685 1447.57