Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0489 ATGACAGGCCCCACCGTGAGGGTGAGAGTGGAGAGCATCTTCCCCGACTCAAACGCCACCAGCTTCAACCCGCCCCATGCCCTCTCTCCAGTCTCCACCATCAAACCCAAACTCAAACCTACCCACCCACCGTCCTCTTCTCTCTCTAACTTTCTCTCTAGAATGGACGCCGATGTCCCCTGGGCGGGCGGCCAGGGCGGAGGCGGGTTTATGAGCAACTCCCTAAGCACTAGTCTTTCTCTGCCGCTGGCCCGTTACACGACGAGGCTGATCACGGGAGAGCACCATAGCCTTCTATGGGACTGCACGCAGCCAAGATCGGAGGACTACGACGACCGGCACATGAGCGACGGTGGCGGCGGCGGTGGCGATTTCTCGAAGCCCATTGTGGTGCTGGACGTGATATGGAACCTGGCGTTTGTCTCCGTGTCGATGGTGGTGCTGCTCTCCACGTTTCAGGAGAGGCCGTCGAGGCCGTTGAGGGTTTGGATTTTTGGGTATGCTTTGCAGTGCCTTTTGCATGTGGGTTTTGTGTGTTTTCAGTTCCGAAGGAGGAACGGCAATGAAGACCGTCACAGCAGCATAGTGAAAAGGCTGGAGTCAATGAACACAATGTTTTCATCTGTCTGGTGGGTGTTTGGATTCTGTTGGATTCTTGCTGGTGGCCAAGTACTTATGCAAGATTCTCCTCGTCTTTACTGGTTGGCAGTGGTGTTCTTAGCCTTTGATGTATTCTTTATGATGTTTTGCATCGGGATGGCCTGTATCTTTTTCTTTGCTCTGTTCTGTTGCATTCCACTGGCAGCAATTGCTTATGCCATGAAAATTAGAGAAGGTGCATCTGAAGATGATATCAGGCTTCTTCCAAGGTATCGTTTTTGTGATGCTAGTTTGGTGAGGAAAGTTGACGATGACAAGAAGCAAGCACTTGAGGCAGCAGTAGAGTTAGGCAGCAGTAGCTCCATTAGTGATCTTGCTCTTCATCCTGAGGATTCTGAATGCTGCATATGCCTTTCTCGGTATGTAGATGGGGCAGAGCTTTATATCCTTCCCTGCAACCACCATTTTCATTGTGGATGCATTAGCAGATGGCTTAGGATAAATGCAACCTGCCCTCTCTGCAAATTCAATATCCTTAGGGGTGATATGTTGGTCTGA 1158 0.5078 MTGPTVRVRVESIFPDSNATSFNPPHALSPVSTIKPKLKPTHPPSSSLSNFLSRMDADVPWAGGQGGGGFMSNSLSTSLSLPLARYTTRLITGEHHSLLWDCTQPRSEDYDDRHMSDGGGGGGDFSKPIVVLDVIWNLAFVSVSMVVLLSTFQERPSRPLRVWIFGYALQCLLHVGFVCFQFRRRNGNEDRHSSIVKRLESMNTMFSSVWWVFGFCWILAGGQVLMQDSPRLYWLAVVFLAFDVFFMMFCIGMACIFFFALFCCIPLAAIAYAMKIREGASEDDIRLLPRYRFCDASLVRKVDDDKKQALEAAVELGSSSSISDLALHPEDSECCICLSRYVDGAELYILPCNHHFHCGCISRWLRINATCPLCKFNILRGDMLV* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0489 385 ProSiteProfiles Zinc finger RING-type profile. 334 375 IPR001841 -
Vvi8g0489 385 SMART ring_2 334 374 IPR001841 -
Vvi8g0489 385 FunFam E3 ubiquitin protein ligase RIE1 314 382 - -
Vvi8g0489 385 SUPERFAMILY RING/U-box 327 379 - -
Vvi8g0489 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 381 IPR013083 -
Vvi8g0489 385 PANTHER TARGET OF ERK KINASE MPK-1 126 379 - -
Vvi8g0489 385 Pfam Ring finger domain 333 375 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0489 Vvi-Chr8 11231638 11255659 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0489 125 382 C3H Transcription Factor Family AT1G68070 47.887 4.21e-91 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0489 - - vvi:100253433 762.296