Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0483 ATGAAAAGGCACATTAAGGAATTTCATGATGAGGAGTCTCCCCCTAATGATGTTGGTTCCAAACAATATGTATGCCCTGAACTTGGGTGTGGAAAGGTGTTCAAATTTGCTTCAAAGTTGCAGAAGCATGAGGATTCTCATGCTAAGCTGGACTCAGTGGAGGCAGTCTGTTTAGAACCAGAATGTTTGAAACACTTCACTAATGAACAATGCCTCAAGGCTCATCTCCAATCCTGCCACCAACACATTATCTGTGAGATATGTGGCACCAAGCAGCTGAAGAAGAACATCAAGAGGCACCTCAGGACACATGAGTCAGTATGTTCCTCTGAGAGAGTCAAATGTCACTTTAAGGGTTGTCTTCACACGTTTTCAACTAAATCAAATCTTGATCAACATGTGAAGGCTGTGCATCTTAAGCTCAGACCATTTGTCTGCGGTATTCCGGGTTGTGGCATGAGATTCCCATTCAAGCATGTGAGAGATAACCACGAGAAAACTGGATGCCACGTTTATACCCATGGGGATTTTGAGGAGTTGGATGAGCAATTCAGGCTGAGGCCAAAGGGTGGCAGGAAGAGGAAGTCCCCACCTATAGAAGCACTGCTGCGGAAGAGGGTGACTCCGCCAAGTCAATCAGATTCTATTTTGTGTCAAGGGCCGGAGTACCTTTCTTGGCTACTCTCAGATGCTGAGGATCAGCAGTGA 708 0.4562 MKRHIKEFHDEESPPNDVGSKQYVCPELGCGKVFKFASKLQKHEDSHAKLDSVEAVCLEPECLKHFTNEQCLKAHLQSCHQHIICEICGTKQLKKNIKRHLRTHESVCSSERVKCHFKGCLHTFSTKSNLDQHVKAVHLKLRPFVCGIPGCGMRFPFKHVRDNHEKTGCHVYTHGDFEELDEQFRLRPKGGRKRKSPPIEALLRKRVTPPSQSDSILCQGPEYLSWLLSDAEDQQ* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0483 235 Gene3D Classic Zinc Finger 16 84 - -
Vvi8g0483 235 ProSitePatterns Zinc finger C2H2 type domain signature. 146 170 IPR013087 -
Vvi8g0483 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 52 IPR013087 -
Vvi8g0483 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 113 143 IPR013087 -
Vvi8g0483 235 ProSitePatterns Zinc finger C2H2 type domain signature. 57 80 IPR013087 -
Vvi8g0483 235 PANTHER ZINC FINGER PROTEIN 1 229 - -
Vvi8g0483 235 SMART c2h2final6 55 80 IPR013087 -
Vvi8g0483 235 SMART c2h2final6 113 138 IPR013087 -
Vvi8g0483 235 SMART c2h2final6 144 170 IPR013087 -
Vvi8g0483 235 SMART c2h2final6 83 104 IPR013087 -
Vvi8g0483 235 SMART c2h2final6 23 47 IPR013087 -
Vvi8g0483 235 ProSitePatterns Zinc finger C2H2 type domain signature. 115 138 IPR013087 -
Vvi8g0483 235 SUPERFAMILY beta-beta-alpha zinc fingers 96 151 IPR036236 -
Vvi8g0483 235 Gene3D Classic Zinc Finger 108 176 - -
Vvi8g0483 235 ProSitePatterns Zinc finger C2H2 type domain signature. 25 47 IPR013087 -
Vvi8g0483 235 MobiDBLite consensus disorder prediction 188 215 - -
Vvi8g0483 235 SUPERFAMILY beta-beta-alpha zinc fingers 19 48 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0483 Vvi-Chr8 11203024 11204088 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0483 10 173 C2H2 Transcription Factor Family AT1G72050 64.024 1.13e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi8g0483 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0483 K09191 - vvi:100260239 505.753