Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0479 ATGGATGTTGGTTTGATAGACGAGAACATGGAACATTATGTGGGAGCTGTTGAAGTTGATTCTCTACCTAATGAAGGTGGAGAGGTGGATGGATCTGAAGACCCTACAGAGAAGGAGTTGCTTACTCAGGATGCAAATGGGAATGAAGAGCCACATGTGGGTATGGAGTTCAAATCTGGAGATGCTGCCAAAACTTTTTATGATGAATATGCAAAGCGTGTAGGCTTTAGTACACGTGTCAATCAGTCCAGTCTCTGTAAGCCTGATGGGACAATTTCTGAACTGGAGTTTATATGTGGAAGGGAGGCCTTGAAAAGAAAAAATGGTGAAAAGTGCAATGCCATGTTCAAGGTTGAGAGACAGGATCTGGACAAGTGGGTGGTAACCAAATTTGTAAAGGAGCATAGCCACTCAACTATCACCCCCAATAAGGTGCATTACCTCCGGCCTCGTAAACAATTTTCTGGGGCTAAAAAGACCATGGATCAATCTTATAATGATATGGATTTTTCCTCCAATGATGATATGGATCCTTCTATCGATGGAAATCACATTCCCATTGAAATAAGCTGTGTAAATCGCCCTGTTAAGAATTTTATGTCTGCAAGTTCTGCTAGACATTCCAATAGAAAGAGACACCTTGGAGATGCTCAGAATCTCCTGGATTATTTTAAGAAGATGCAAGCTGAGCATCCTGGCTTCTATTATGCAGTACAACTTGATGATAATAATTGCATGACTAATGTTTTTTGGGCAGATGCAAGGTCGAGAACAGCTTACAGTCACTTTGGTGATGTGGTTAACTTTGACACAACTTACAGGCTAAATCATTACCGGGTACCATTTGCTCCATTCACGGGGGTGAACCATCATGGTCACATGGTGTTATTTGGTTGTGCTTTACTTGCAGATGAGTCTGAATCTTCCTTTATTTGGCTTTTTAAGACATGGCTTGCAGCAATGAATGATCAGCCGCCTGTTTCTATAACAACTGACCAAGATAAAGTTGTTAGGTTAGCTGTTTCTAAGGTGTTTCCTGGAACACGCCATCGTTTATGCAAGTGGCACATTTTGAGAGAAGGGCAGAAAAGACTGGCTCATGTATGTTCTGCTCATCCCATGCTGCAGGGGGATTTGTATAACAGCATTAACTTGACTGAGACGATTGAAGAGTTTGAGTCATCCTGGAGCTCTATCATTGATAGGTATAATCTCTCAAAAAATGATTGGCTCCAAGCATTATATAATGCTCGCACACAGTGGGTCCCAGTTTATTTTCGGGATTCTTTTTTTGCTGCAATTTCTTCAAACCAAGGAGGTGAAGCTGCTGGTTCCTTCTTTGATGGTTATGTGGATCAACATACTACCTTACCATTGTTCTTTAGGCAGTATGAAAAAGCTTTGGAACATTGTTTTGCAAAGGAGTTAGAAGCTGATTTTGATACATTTGGGACCACACCTGTGTTGAAGACACCATCACCTATGGAGAAACAGGCAGCAAATCTCTATACCAGGAAAATATTTTCTAAGTTTCAAGAAGAATTAGTTGAAACTTTTGCCTATACTGCAAACACAATAGAAAGTGATGGGGCAGTCAGCACTTTTAGAGTTGCAAAATTTGACGATCAGCAAAAGGTATACATGGTCACTTTGAATGTTCCTGAAATTATTGCAAGTTGCAACTGTCAGATGTTTGAGTACTCAGGCATCCTTTGTAGACATGTATTGACAGTCTTCACTGTGACAAATGTTCTTACACTACCATCCCACTACATTTTGAAACGCTGGACAAGGAATGCCAAAGTAGGGGTTGGATCATATGACCAAGGGCCTGAACTTGAAACTCCAAAATCCGTGACCTCACGTTACAATACTATATGTCGAGAAGCCATCAAATATGCTGAGGAAGGGGCAATAACCGCAGAAACATATGACGTGGCCATGGGTGCTATAAGAGAGATGGGCAAGAAGATTGCTGTCATGAAAAAAAATGTTGCAAGAGTTACACCTGGGGGACCTAGGGTCAGTGGAAGCCAGGAAGACAGTAATAAGCTGCCCTCTTCATCGGCTTCAAACTTGATCCCATTATTGTGGCCTCAACAAGAGGAAGCGAAATTTAAGCCACTCTGGAATTCTTCTGATACAGCACCAACAGTAAGGTTGCATCAAGCAACACGTCATACAAATACTAATGATACTGGTTCTCTTGCACCTCCTGCTGATCAGTTGCCTCTCATGGCTCCTGTGTCATTTCAACATGATGATGCCCTTCCAGATAACATGGTTGTTCTCCCTTATCTCAAGTCTATGACTTGGGTCATGGAAAATAAGAACTCAAGACCAGCCAAAAGACTTGCTGTGATCAACCTTAAGCTTCAAGATTATAGCAAGGCTCCTCTAGGCGAAACAGAAGTGAAGTTTCAGCTTTCTAAGGTCACACTGGAACCTATGTTGAGATCCATGGCAGACATTGGTGAGCAGCTTGCAACACCAGATAGTCGGGTTGCAGTGATAAATCTGAAGTTGCAAGATACTGAGACAACTTCAGGGGAAGCAGAGGTGAAGTTTCAGGTCTCCAAAGACACTCTTGGTGCCATGTTAAGATCTATGGCCTATATCCGTGAACAGCTCTCCAACCCTGTTCAACGCCAACAAGGACAACCTTCAAAAAAGCAAAGGCTATAA 2685 0.4201 MDVGLIDENMEHYVGAVEVDSLPNEGGEVDGSEDPTEKELLTQDANGNEEPHVGMEFKSGDAAKTFYDEYAKRVGFSTRVNQSSLCKPDGTISELEFICGREALKRKNGEKCNAMFKVERQDLDKWVVTKFVKEHSHSTITPNKVHYLRPRKQFSGAKKTMDQSYNDMDFSSNDDMDPSIDGNHIPIEISCVNRPVKNFMSASSARHSNRKRHLGDAQNLLDYFKKMQAEHPGFYYAVQLDDNNCMTNVFWADARSRTAYSHFGDVVNFDTTYRLNHYRVPFAPFTGVNHHGHMVLFGCALLADESESSFIWLFKTWLAAMNDQPPVSITTDQDKVVRLAVSKVFPGTRHRLCKWHILREGQKRLAHVCSAHPMLQGDLYNSINLTETIEEFESSWSSIIDRYNLSKNDWLQALYNARTQWVPVYFRDSFFAAISSNQGGEAAGSFFDGYVDQHTTLPLFFRQYEKALEHCFAKELEADFDTFGTTPVLKTPSPMEKQAANLYTRKIFSKFQEELVETFAYTANTIESDGAVSTFRVAKFDDQQKVYMVTLNVPEIIASCNCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKVGVGSYDQGPELETPKSVTSRYNTICREAIKYAEEGAITAETYDVAMGAIREMGKKIAVMKKNVARVTPGGPRVSGSQEDSNKLPSSSASNLIPLLWPQQEEAKFKPLWNSSDTAPTVRLHQATRHTNTNDTGSLAPPADQLPLMAPVSFQHDDALPDNMVVLPYLKSMTWVMENKNSRPAKRLAVINLKLQDYSKAPLGETEVKFQLSKVTLEPMLRSMADIGEQLATPDSRVAVINLKLQDTETTSGEAEVKFQVSKDTLGAMLRSMAYIREQLSNPVQRQQGQPSKKQRL* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0479 894 Pfam MULE transposase domain 266 359 IPR018289 -
Vvi8g0479 894 SMART 26again6 558 585 IPR006564 GO:0008270
Vvi8g0479 894 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 659 IPR031052 GO:0006355
Vvi8g0479 894 ProSiteProfiles Zinc finger SWIM-type profile. 547 583 IPR007527 GO:0008270
Vvi8g0479 894 Pfam SWIM zinc finger 558 581 IPR007527 GO:0008270
Vvi8g0479 894 MobiDBLite consensus disorder prediction 668 688 - -
Vvi8g0479 894 Pfam FAR1 DNA-binding domain 65 139 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0479 Vvi-Chr8 11104289 11117815 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi8g0479 MULE 1.9e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0479 - - vvi:100244871 1784.62