Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0474 ATGCTGCCACGTAGTATCCTGTGCGCCTTCGTTGTTTACGTTGATGATTTATTTAAAGATACAAAAGAGGGAGATTATGCGATTATGGATCACTACGAGGCCTTGGGGATCGGCCGAAACGCCAGCAAAGGAGAAATAAAAGAAGCGTTTCGGAAGTTGGCTCTGAAATATCATCCAGACAAGCACGCTCAGTCGCCCAAGGCCGTGAGAGACGGCGCAACTCTCCGATTCAAGCAGGTTTCCGAGGCCTACGAGGTCCTTTCCGACGATCGCAAGCGCTCCCTCTACAATCTCCGATCCTCCACCGCCCCACCCGGATTTTCAGGTGGCTACGCCCACTCCTATCATTATAATAATGAAAGACCTAGGTATTCATCTAGGCCCAATGCCGATGCCTTTGTTTCCAAATTTGAGGTGGTTCTTCGCTTCCTGACCACTCGCGCGTTTCTACTCAACGTGGCCTTTGCTGGTGCTTTATTAGGTGGTATGGCAATAATTGATAGGAGTGGGGAGACACTATGGAAGATGAACAATTCTGGGAAATCATTTGACGAAGCCATGGAGTCCATTGGGAAGGCAAAAGCACATAAAGATGACATGTAA 603 0.4842 MLPRSILCAFVVYVDDLFKDTKEGDYAIMDHYEALGIGRNASKGEIKEAFRKLALKYHPDKHAQSPKAVRDGATLRFKQVSEAYEVLSDDRKRSLYNLRSSTAPPGFSGGYAHSYHYNNERPRYSSRPNADAFVSKFEVVLRFLTTRAFLLNVAFAGALLGGMAIIDRSGETLWKMNNSGKSFDEAMESIGKAKAHKDDM* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0474 200 FunFam DnaJ domain protein 25 109 - -
Vvi8g0474 200 PANTHER CO-CHAPERONE PROTEIN DJLA 29 126 - -
Vvi8g0474 200 CDD DnaJ 30 89 IPR001623 -
Vvi8g0474 200 SUPERFAMILY Chaperone J-domain 27 113 IPR036869 -
Vvi8g0474 200 Pfam DnaJ domain 30 97 IPR001623 -
Vvi8g0474 200 PRINTS DnaJ domain signature 50 65 IPR001623 -
Vvi8g0474 200 PRINTS DnaJ domain signature 32 50 IPR001623 -
Vvi8g0474 200 PRINTS DnaJ domain signature 72 92 IPR001623 -
Vvi8g0474 200 PRINTS DnaJ domain signature 92 111 IPR001623 -
Vvi8g0474 200 SMART dnaj_3 29 92 IPR001623 -
Vvi8g0474 200 Gene3D DnaJ domain 19 105 IPR036869 -
Vvi8g0474 200 ProSiteProfiles dnaJ domain profile. 30 100 IPR001623 -
Vvi8g0474 200 ProSitePatterns Nt-dnaJ domain signature. 77 96 IPR018253 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0474 Vvi-Chr8 11031931 11038503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0474 31 97 C2H2 Transcription Factor Family AT1G74250 43.284 8.24e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0474 - - vvi:100255003 403.675