Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0473 ATGTATCATCCCAAAAAATTTTCAACTGCAAGTTTAGTGCCGCATAAAGCTCAAGGTAGTGAACCTCTTGCTACTGTTGGGGCCTTGGGTGGATCATCTGTTAAAAATTCAAATCCGACTGGGGGAAGTGGAAAGCAGCGGCTGCGATGGACTTCGGATCTTCATGACCGCTTTGTGGATGCCATAACTCAGCTCGGTGGACCAGATAGGGCAACACCAAAAGGTGTGCTAAGAGTGATGGGTGTACCTGGACTTACCATTTATCACGTGAAAAGCCATTTACAGAAGTATCGCCTTGCGAAATACCTGCCAGAATCTCCTGCTGATGGTTCTAAAGATGAAAAGAAAGGATCTGGAGACAGTGGCTCTAGCATGGATTCTGCCCCGGGAGTGCAAATTAATGAGGCACTGAGGCTGCAAATGGAGGTCCAGAAGCGTCTTCATGAACAGCTCGAGGTGCAAAGGCAGTTACAGATGAGAATAGAAGCACAAGGGAAGTACTTGCAGAAGATCATAGAGGAGCAGCAGAAACTAGGGGGTGCATTGAAAGCCTCTGAGGCGGTACCATTGGTTGATGATAAGCAAAATCCATCTCAGTCAAAGCCACTTCCTGATGCCTCTATTGGGTCCTCATCTCCTCGGAAGAAACAGAAGGTCGACGATGGGATGACACATGATTGCAATCCTCCCCTCGATCCACCAAAACCTGACCATGGTTGCAACCCTCCCCTCAATCCACCAAAACCTGACCCGAAGCATGGTTTCATTGATCGGTGGGATCGAGACATGTATGGGAATGATGGTGTGTTTGGATTCAACTTGGAAATAGAGTTCAAAGAGCAAGAAGATGGGGGATCTGAGCAGAGAGCAGCACCTCTGGAACTGGAGCCAATGTGTGGTTCAAAATAG 909 0.4785 MYHPKKFSTASLVPHKAQGSEPLATVGALGGSSVKNSNPTGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGSKDEKKGSGDSGSSMDSAPGVQINEALRLQMEVQKRLHEQLEVQRQLQMRIEAQGKYLQKIIEEQQKLGGALKASEAVPLVDDKQNPSQSKPLPDASIGSSSPRKKQKVDDGMTHDCNPPLDPPKPDHGCNPPLNPPKPDPKHGFIDRWDRDMYGNDGVFGFNLEIEFKEQEDGGSEQRAAPLELEPMCGSK* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0473 302 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 44 225 IPR044848 GO:0003700
Vvi8g0473 302 MobiDBLite consensus disorder prediction 30 47 - -
Vvi8g0473 302 MobiDBLite consensus disorder prediction 229 250 - -
Vvi8g0473 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Vvi8g0473 302 MobiDBLite consensus disorder prediction 104 129 - -
Vvi8g0473 302 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Vvi8g0473 302 FunFam Myb family transcription factor 44 102 - -
Vvi8g0473 302 MobiDBLite consensus disorder prediction 190 259 - -
Vvi8g0473 302 MobiDBLite consensus disorder prediction 192 213 - -
Vvi8g0473 302 MobiDBLite consensus disorder prediction 1 48 - -
Vvi8g0473 302 SUPERFAMILY Homeodomain-like 44 99 IPR009057 -
Vvi8g0473 302 Pfam MYB-CC type transfactor, LHEQLE motif 131 177 IPR025756 -
Vvi8g0473 302 Coils Coil 134 154 - -
Vvi8g0473 302 Pfam Myb-like DNA-binding domain 48 98 IPR001005 -
Vvi8g0473 302 MobiDBLite consensus disorder prediction 280 302 - -
Vvi8g0473 302 Gene3D - 44 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0473 Vvi-Chr8 11018287 11023164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0473 33 205 G2-like Transcription Factor Family AT4G28610 52.273 2.52e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi8g0473 Myb_DNA-binding 3.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0473 - - vvi:100256914 589.726