Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0472 ATGAAGCCTTCGGACACAACGGAGGTCACAGAGGAGGTTCTGCCACCACCTCCATCTGTGATTCCTCATGATGGAGTTGGCATACAAGTAAAACCAGAACATACATCTGAGTCGGTGAAGAAAACAACAAAGCCAAAGCGTGTCCCGATGTCTAGGCGTGGTTTTGGATCTAAAGGACAAAAAATATCACTCCTAACGAACCATTTTAAAGTTGGTATTACTAATGCTAGTGGCCACTTCTTTCACTACAGCGTAGCCTTGACATATGAAGATGGCCGGCCTGTTGAAATGAAGGGTGTTGGAAGAAAAATAATGGATAAAGTTCACGAGACTTATGACACTGAGCTGTCTGGGAAGGATTTTGCTTATGATGGGGAGAAGAGCTTATTCACGGTTGGGGCCCTCCCACACAACAAACTGGAATTCACTGTTGTGCTTGACAGTGTCTCTTCAAATAGAAATACTAGAAATGGCAGCCCTGATGTCAATGGAAGTCCAAATGGGGGTGACCGAAAGAGGCCAAGGCGCGCATCCCAGTCTAAAACATTTAAAGTAGAGATAAGTTTTGCTGCCAAAATCCCAATGCAGGCCATTGCAAGCGCATTACGTGGTCAAGAATCAGAGAATTCTCAAGAAGCCATCAGAGTCTTAGACATAATTTTGAGGCAGCATGCAGCAAAACAGGGCTGCCTTCTTGTCCGTCAATCATTCTTTCATGATAACTCAAGGAATTTTACAGACTTGGGAGGTGGTGTCCTTGGATGCAGAGGGTTTCATTCCAGTTTTCGAGCCACACAAGGTGGTTTATCTCTAAATGTTGATGGGTCCACTACTACAATCATACAGCCTGGACCGCTTGTTGATTTTCTCATTGCAAACCAAAATGCACGAGATCCATTCCAGCTCGACTGGTCAAAGGCTAAACGGACTCTCAAAAATTTAAGGATAAAGGTAAAACCTTCTAATTCAGAGTACAGAATTGTTGGACTGAGTGAAAGTCCTTGCAAAGAGCAGATGTTCACCCTAAAAAATAGGGGAAAAAATGGAAATGATGATGCTGAAAGTATAGAAGTGACGGTTTATGATTATTTTGTTAACTATCGCCAGATAGAGTTGCGTTATTCTGGAGACTTACCTTGCATCAATGTTGGGAAACCAAAAAGGCCTACGTACTTGCCTATTGAGCTTTGTTTTTTGGTTTCTTTACAACGCTATACGAAGGCATTAACTGTTCATCAAAGGTCCACCTTGGTAGAAAGATCAAGACAAAAGCCCCAAGAGAAGATGACAATCTTAACTGATGTCATGAAAAGCAACAATTACGAGGCTGATTCATTGCTGCGTTCTTGTGGCATTTCAATCAGTACTCAATTTACTCAAGTTGAAGGTCGCGTTCTTTCAGCCCCAAGGTTAAAGGCAGGAAATGGAGAAGATCTTATTGCTAGAAATGGGCGGTGGAGCTTCAACAATAAGAAACTTGCTGAACCTTCAAAAATCAAGAATTGGGCTGCTGTAAACTTCTCTGCTCGCTGTGATACAAAGGGTCTATGTAGAGATATAGCCAGGTTTGGAGAAACGAAAGGAATTTTCATAGATCCCCCAATAGATGTTTTTGAAGAGAATCCTCAATTTAGACGAGCTCCACCTATGGTTCGAGTGGAGAAGATGTTTGAACAAATGAAGCCACAATTGCCTGATGGTCCTCCCCATTTTATTGTCTGCCTTCTTCCTGATAGGAAGAACTCTGACATATATGGTCCATGGAAAAGGAAGTGCCTTGCAGAATTTGGAATTTTTAATCAATGCCTTGCACCTACTAGAGTTAATGATCAGTATATCATGAATGTACTTTTGAAGATCAATGCCAAACTTGGTGGTTTGAATTCTCTGTTAGCCATTGAACCATCAAGAAATATACCCTTGGTTTCCAAGGTTCCTACCATAATCTTTGGAATGGATGTGTCACATGGCTCCCCTGGCCAATCTGATATTCCATCTGTTGCTGCTGTTGTGAGTTCTAGGTGTTGGCCACTGATCTCTCGTTACAGAGCTTCTGTTCGTACACAGTCACCGAAAGTTGAAATGATAGATTCGCTTTTTAAGCCAGTATCAGATGATAAAGATTTAGGCATTGTCAGGGAGCTGCTGTTGGACTTTTATGTGAGTTCAGGGCAAACAAAGCCCACTCAAATAATCATTTTCAGGGATGGAGTCAGTGAATCGCAGTTCAACCAAGTCTTGAACATTGAGCTAGATCAAATTATTGAGGCTTGCAAGTTCCTCGATGAGAAGTGGACTCCTAAATTCACAATAATTATTGCCCAGAAAAATCACCACACAAAATTCTTCCAAGCTGGGTCTCAAGATAATGTGCCTCCTGGAACTGTAATTGACAGCAAAGTCTGTCATCCAACGCACAACGATTTCTACATGTGCGCACATGCAGGGATGATAGGGACAACAAGACCAACACATTACCATGTTCTTCTAGACGAGATAGGCTTTTCAGCTGATGATATGCAAGAACTCATCCATTCTCTGTCCTATGTGTATCAGAGAAGCACTACTGCCATATCCATCGTCGCCCCAGTTCGCTATGCACACCTGGCGGCTACACAGGTTTCACAGTTCATGAAGTTCGATGACTCCTCGGAGACATCTTCGAGCCATGGAAGTTTGACTTCTGTTGGAGGTCCCCCTGTCCCCGAACTCCCCAGGTTGCATGAAAAGGTTTGCAGTTCTATGTTCTTTTGCTGA 2757 0.4269 MKPSDTTEVTEEVLPPPPSVIPHDGVGIQVKPEHTSESVKKTTKPKRVPMSRRGFGSKGQKISLLTNHFKVGITNASGHFFHYSVALTYEDGRPVEMKGVGRKIMDKVHETYDTELSGKDFAYDGEKSLFTVGALPHNKLEFTVVLDSVSSNRNTRNGSPDVNGSPNGGDRKRPRRASQSKTFKVEISFAAKIPMQAIASALRGQESENSQEAIRVLDIILRQHAAKQGCLLVRQSFFHDNSRNFTDLGGGVLGCRGFHSSFRATQGGLSLNVDGSTTTIIQPGPLVDFLIANQNARDPFQLDWSKAKRTLKNLRIKVKPSNSEYRIVGLSESPCKEQMFTLKNRGKNGNDDAESIEVTVYDYFVNYRQIELRYSGDLPCINVGKPKRPTYLPIELCFLVSLQRYTKALTVHQRSTLVERSRQKPQEKMTILTDVMKSNNYEADSLLRSCGISISTQFTQVEGRVLSAPRLKAGNGEDLIARNGRWSFNNKKLAEPSKIKNWAAVNFSARCDTKGLCRDIARFGETKGIFIDPPIDVFEENPQFRRAPPMVRVEKMFEQMKPQLPDGPPHFIVCLLPDRKNSDIYGPWKRKCLAEFGIFNQCLAPTRVNDQYIMNVLLKINAKLGGLNSLLAIEPSRNIPLVSKVPTIIFGMDVSHGSPGQSDIPSVAAVVSSRCWPLISRYRASVRTQSPKVEMIDSLFKPVSDDKDLGIVRELLLDFYVSSGQTKPTQIIIFRDGVSESQFNQVLNIELDQIIEACKFLDEKWTPKFTIIIAQKNHHTKFFQAGSQDNVPPGTVIDSKVCHPTHNDFYMCAHAGMIGTTRPTHYHVLLDEIGFSADDMQELIHSLSYVYQRSTTAISIVAPVRYAHLAATQVSQFMKFDDSSETSSSHGSLTSVGGPPVPELPRLHEKVCSSMFFC* 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0472 918 MobiDBLite consensus disorder prediction 882 901 - -
Vvi8g0472 918 Pfam N-terminal domain of argonaute 60 221 IPR032474 -
Vvi8g0472 918 CDD Piwi_ago-like 447 878 IPR045246 -
Vvi8g0472 918 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 44 881 - -
Vvi8g0472 918 Pfam PAZ domain 287 417 IPR003100 GO:0005515
Vvi8g0472 918 CDD PAZ_argonaute_like 283 400 - -
Vvi8g0472 918 MobiDBLite consensus disorder prediction 151 181 - -
Vvi8g0472 918 FunFam Protein argonaute 3 639 918 - -
Vvi8g0472 918 Gene3D - 465 632 - -
Vvi8g0472 918 SMART DUF1785_2 231 283 IPR014811 -
Vvi8g0472 918 MobiDBLite consensus disorder prediction 1 56 - -
Vvi8g0472 918 SMART Piwi_a_2 571 879 IPR003165 GO:0003676
Vvi8g0472 918 Gene3D paz domain 277 405 - -
Vvi8g0472 918 SUPERFAMILY Ribonuclease H-like 557 877 IPR012337 -
Vvi8g0472 918 ProSiteProfiles PAZ domain profile. 325 401 IPR003100 GO:0005515
Vvi8g0472 918 Pfam Argonaute linker 2 domain 428 472 IPR032472 -
Vvi8g0472 918 ProSiteProfiles Piwi domain profile. 571 879 IPR003165 GO:0003676
Vvi8g0472 918 Gene3D - 638 918 IPR036397 GO:0003676
Vvi8g0472 918 Pfam Piwi domain 571 879 IPR003165 GO:0003676
Vvi8g0472 918 Pfam Argonaute linker 1 domain 233 281 IPR014811 -
Vvi8g0472 918 SUPERFAMILY PAZ domain 278 441 IPR036085 GO:0005515
Vvi8g0472 918 FunFam Protein argonaute 7 278 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0472 Vvi-Chr8 10978652 10994078 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0472 16 918 Eukaryotic Initiation Factors Gene Family AT1G48410 34.833 1.66e-171 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0472 K11593 - vvi:100260151 1840.47