Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0471 ATGTTCAGTGGTCTTTGTTACAATAACAGGGGCCAGGAAGAATTGCTGAAATCTCACTTCCAAAATCAACTCCATAGTCTCCATAACAGACGATTCTCTATGAAGCTACACTCTTTTGCAGCATTACTTTTTTCCATACTATTGTTTCTCCATCAAACTATTGCTGATCTGGAGTCAGACAAACAAGCGCTCCTTGAGTTTGCCTTTGTTGTCCCTCATGTTCGCACAATCAACTGGAGTCCGGCTACTGCAATCTGCATCTCTTGGGTTGGCATCAAATGCGATGGTAACCGTGTAGTTGCCCTCCGGCTACCTGGTGTTGGCCTCTATGGTCCCATTCCAGCCAACACACTTGGGAAGCTGGATGCTCTTAAGACCCTCAGCCTCCGTTCCAACCACCTCAATGGGAATCTTCCATCTGATGTTCTGTCCCTCCCTTCTCTGCAGTACATGTACCTCCAACATAACAATTTTTCAGGTAATATTCCTTCCTCTCTTCCACCCCTGCTCATCTTGCTTGATCTCTCCTTCAATTCCATTGTGGGCAACATTCCAGCCACAATTCAGAACTTAACGCATCTCACTGGATTAAACCTCCAAAACAATTCCCTAACTGGGCCCATCCCTGTTATCAACCTCCCAAGGCTTAACCATGTGAATTTGAGCTATAACGACCTTAACGGTTCAATTCCATATTTCTTCCGCAAGTTCCCTGCTTCCTCTTTTGAAGGGAACTCTCTGTTATGTGGACAGCCACTAAACCATTGCTCTTCAGTCACTCCCTCGCCTTCTCCTTCCCCATCTTCCATACCATCCCCAGCAACAGTTTCTCCAGAGCCAAGAGCTAGCAACAAGAAGAAACTAAGTATAGGGGCTATTATTGCCATTGCAATTGGGGGTTCTGCAGTGTTGTGTCTCCTATTTGTGGTGATACTGCTATGCTGTCTGAAGAAAAAAGATGGTGAAGGTACTGTCTTACAGAAAGGAAAGTCCCTGAGCAGTGGAAAGAGTGAAAAGCCTAAGGAGGACTTTGGGAGTGGGGTGCAAGAGCCCGAGAAGAACAAGTTAGCTTTCTTCGAAGGCTCCTCCTATAATTTTGATCTTGAGGATTTGTTAAGGGCCTCTGCAGAAGTACTGGGAAAGGGAAGCTATGGGACGGCCTACAAGGCCATCTTGGAGGAGGGAACAATTGTGGTTGTGAAGAGGTTGAAAGAAGTGGCAGCGGGCAAAAGAGAGTTTGAACAACACATGGAGATTGTGGGGAGGGTCAGTTGCCACCCAAATGTCGTGCCTCTTCGTGCTTACTACTACTCAAAGGATGAGAAGCTCCTGGTTTATGACTACATAACGGGCGGCAGCTTGTTTGCACTATTGCATGGGAACAGGGATCCTGAGAAAACACTGCTGAACTGGGAATCCAGAGTAAAGATTGCCCTTGGAACTGCAAAGGGTATTGTTCATATCCACTCTGCCAATGGTGGGAAATTCACCCATGGCAATATCAAGTCCTCCAATGTCCTCCTCACCCAAGACGTTGATGGCCAAATCTCAGATTTTGGCCTGACATCTCTGATGAACTACCCTTTGGTCACATCTAGAAGCCTTGGTTACCGAGCTCCTGAGGTGATTGAAACTCGGAAATCTACTCAAAAGTCCGATGTTTACAGTTACGGTGTGCTCCTCCTTGAGATGCTTACAGGCAAGGCACCAGTACAGTCACCTGGGCGTGATGATGTGGTTGATCTCCCAAGATGGGTCCAGTCTGTTGTTCGAGAGGAATGGACGGCTGAGGTGTTTGATGTAGAGCTGATGAAGGATCAAAGTTATGAAGAAGAGATGGTGCAAATGCTTCAGATCGCAATGGCCTGTGTGGCAAAGATGCCAGACATGAGGCCTAAGATGGAGGAAGTTGTTAGGCTGATGGAAGAAATCCGGCCATCAGACTCAGAAAACCGGCCATCCTCCGACAACCAATCCAAGGGCTCCACCGCACAAACCCCATGA 2004 0.4721 MFSGLCYNNRGQEELLKSHFQNQLHSLHNRRFSMKLHSFAALLFSILLFLHQTIADLESDKQALLEFAFVVPHVRTINWSPATAICISWVGIKCDGNRVVALRLPGVGLYGPIPANTLGKLDALKTLSLRSNHLNGNLPSDVLSLPSLQYMYLQHNNFSGNIPSSLPPLLILLDLSFNSIVGNIPATIQNLTHLTGLNLQNNSLTGPIPVINLPRLNHVNLSYNDLNGSIPYFFRKFPASSFEGNSLLCGQPLNHCSSVTPSPSPSPSSIPSPATVSPEPRASNKKKLSIGAIIAIAIGGSAVLCLLFVVILLCCLKKKDGEGTVLQKGKSLSSGKSEKPKEDFGSGVQEPEKNKLAFFEGSSYNFDLEDLLRASAEVLGKGSYGTAYKAILEEGTIVVVKRLKEVAAGKREFEQHMEIVGRVSCHPNVVPLRAYYYSKDEKLLVYDYITGGSLFALLHGNRDPEKTLLNWESRVKIALGTAKGIVHIHSANGGKFTHGNIKSSNVLLTQDVDGQISDFGLTSLMNYPLVTSRSLGYRAPEVIETRKSTQKSDVYSYGVLLLEMLTGKAPVQSPGRDDVVDLPRWVQSVVREEWTAEVFDVELMKDQSYEEEMVQMLQIAMACVAKMPDMRPKMEEVVRLMEEIRPSDSENRPSSDNQSKGSTAQTP* 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0471 667 Gene3D Ribonuclease Inhibitor 170 258 IPR032675 -
Vvi8g0471 667 CDD STKc_IRAK 379 644 - -
Vvi8g0471 667 Gene3D Transferase(Phosphotransferase) domain 1 449 665 - -
Vvi8g0471 667 MobiDBLite consensus disorder prediction 259 282 - -
Vvi8g0471 667 Pfam Leucine rich repeat N-terminal domain 58 95 IPR013210 -
Vvi8g0471 667 PANTHER OS05G0588300 PROTEIN 42 656 - -
Vvi8g0471 667 MobiDBLite consensus disorder prediction 334 348 - -
Vvi8g0471 667 Gene3D Ribonuclease Inhibitor 59 169 IPR032675 -
Vvi8g0471 667 FunFam Leucine-rich repeat receptor-like protein kinase 168 256 - -
Vvi8g0471 667 FunFam pollen receptor-like kinase 1 341 448 - -
Vvi8g0471 667 SUPERFAMILY L domain-like 70 253 - -
Vvi8g0471 667 MobiDBLite consensus disorder prediction 651 667 - -
Vvi8g0471 667 Pfam Protein kinase domain 376 638 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0471 667 MobiDBLite consensus disorder prediction 326 348 - -
Vvi8g0471 667 Gene3D Phosphorylase Kinase; domain 1 341 448 - -
Vvi8g0471 667 ProSiteProfiles Protein kinase domain profile. 373 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0471 667 SUPERFAMILY Protein kinase-like (PK-like) 377 641 IPR011009 -
Vvi8g0471 667 ProSitePatterns Protein kinases ATP-binding region signature. 379 410 IPR017441 GO:0005524
Vvi8g0471 667 MobiDBLite consensus disorder prediction 641 667 - -
Vvi8g0471 667 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 449 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0471 Vvi-Chr8 10966875 10969044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0471 15 660 Receptor kinase-like Gene Family AT5G58300 63.287 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vvi8g0471 Pkinase 2.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0471 - - vvi:100255050 1249.96