Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0466 ATGGTTGCAATCAAGCGTGGGAACCCTCTCTCCGAGCAAGGTGTGCATGAGTTCCAAAATGAGATTGAAATGCTCTCAAAACTTCGACACCGCCACCTTGTTTCACTGATTGGGTATTGTGAAGAGAACTGTGAAATGATCCTTGTTTATGACTACATGGCTCATGGTACCCTCAGGGAGCATCTATACAAAACACAAAAGCCACCTCTACCATGGAAACAAAGGCTTGAGATAGGCATTGGAGCTGCCCGTGGTTTACATTATCTGCATACTGGTGCAAAACACACTATTATCCATCGAGATGTGAAGACAACTAACATTCTCTTGGATGAGAAGTGGGTTGCGAAGGTTTCTGATTTTGGGTTGTCTAAGACTGGCCCTGCATTGGATCACACACATGTTAGCACTGTTGTGAAGGGCAGTTTTGGGTACTTGGACCCAGAGTATTTCAGGCGGCAACAACTGACAGAAAAATCTGATGTATATTCATTTGGGGTTGTCCTTTTCGAGATCCTGTGTGCTCGGCCAGCTTTGAATCCAACACTTCCAAAGGAGCAAGTGAGCTTGGCAGAGTGGGCGTTGCATTGCCAAAAGAAGGGCATTCTGGATCAGATTATCGACCCATATCTGAAGGGGAAAATTGCACCAGAATGTTTTAAGAAGATTGCTGAAACTGCAGTGAAGTGTGTGTCAGATCAGGGTATTGACAGGCCATCAATGGGTGATGTGCTGTGGAACCTTGAGTTTGCTCTTCAGCTGCAAGAGAGTGCAGAGGAGGCTGGCACAGCCATGGGTGGAATGGAGATTGAAGATGGTTCATTTGACATAGCCTGTGGAGGAAAGAAGGATCCAAATTCATCCCCTGGATTTGACGGCAATGTTACTGATTCAAGGAGTAGTGGGATGACCATGAGCATAGGCGGGCGGAGCCTTGCTAGCGAGGATTCCGATGGGTTGACACCAAGTGCAGTGTTCTCACAGATCATGAACCCAAAAGGACGTTGA 1005 0.4667 MVAIKRGNPLSEQGVHEFQNEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTLREHLYKTQKPPLPWKQRLEIGIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPALDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEILCARPALNPTLPKEQVSLAEWALHCQKKGILDQIIDPYLKGKIAPECFKKIAETAVKCVSDQGIDRPSMGDVLWNLEFALQLQESAEEAGTAMGGMEIEDGSFDIACGGKKDPNSSPGFDGNVTDSRSSGMTMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0466 334 Pfam Protein tyrosine and serine/threonine kinase 2 244 IPR001245 GO:0004672|GO:0006468
Vvi8g0466 334 Gene3D Phosphorylase Kinase; domain 1 1 53 - -
Vvi8g0466 334 SUPERFAMILY Protein kinase-like (PK-like) 2 249 IPR011009 -
Vvi8g0466 334 PANTHER OS07G0166700 PROTEIN 2 254 IPR045272 GO:0004714|GO:0006468
Vvi8g0466 334 Gene3D Transferase(Phosphotransferase) domain 1 54 267 - -
Vvi8g0466 334 MobiDBLite consensus disorder prediction 280 334 - -
Vvi8g0466 334 SMART serkin_6 1 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0466 334 FunFam receptor-like protein kinase FERONIA 1 52 - -
Vvi8g0466 334 FunFam Receptor-like protein kinase FERONIA 53 263 - -
Vvi8g0466 334 MobiDBLite consensus disorder prediction 288 327 - -
Vvi8g0466 334 ProSiteProfiles Protein kinase domain profile. 1 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0466 334 ProSitePatterns Serine/Threonine protein kinases active-site signature. 97 109 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0466 Vvi-Chr8 10930533 10931537 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0466 2 334 Receptor kinase-like Gene Family AT3G51550 86.567 0.0 598
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vvi8g0466 PK_Tyr_Ser-Thr 6.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0466 - - vvi:100261909 682.559