Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0461 ATGGTTTTCTCTGATGTACCTGGTTTGACCAAAACCAGAATGTGCAAACCAATCCAGAACCAGCTACTTTTTCCTATGAACCCCACTGATATTGTCCCCTTGGATCATGTTGAGTTAGATTTTGCTGATGTGTTTGGTCCTCTACCAGTCCAGACACCCAGTGAAATGAATCCTGGGGATTCAGGAGATTCAGTATCTGCAGCAGATACAAATGATCTCATTTATGGTGATCCAGTTGTTATTTATAGCCGGTCACATTCTTTGGTTGGCCCCTCAACTTGTCTTAGTCAATCATTGAAGCTCAGCAAGCTCGCTTTACATGAGATAGAGGATTCAGAGGAACTTGTGGAGTGTCTTCATGAAGAGGCTGTCAAAGAACTTCAGAGGACTTCCAGTAGTGATGATATTTCTGAGAAATCTTTTGAAGACATTGACTCTGATTCCACCACGGTTGAGACTGTGGGCCTTGAGGATTTTGAAGTTATGAAGCTTGTTGGGCAGGGTGCATTTGGAAAAGTATTCCAGGTGAGGAAGAGAAATACATCAGAAATATATGCAATGAAGGTCATGCGGAAAGATAAGATTATGGAGAAAGATCATGCTGAATATATGAAAGCTGAAAGGGATATTTTAACAAAAGTAGATCACCCCTTCATCGTCCAGCTCCGATACTCGTTTCAGACCAAATATCGACTGTACCTTGTGCTGGATTTTGTAAATGGAGGTCACCTTTTCTTTCAGCTTTACAACCACGGTCTTTTCAGAGAGGATCTGGCACGTATATATGCTGCTGAGATTGTTTCTGCAGTTTCTCATCTTCACGCAAATGGAATAATGCATAGGGATCTTAAACCTGAAAATATCTTACTGGATGCAGATGGCCATGCCATGTTGACTGATTTTGGCCTGGCAAAGGAATTTGATGAGAATACGAGATCAAATTCAATGTGTGGAACTGTAGAATATATGTCACCTGAAATTTTTCTTGGGAAAGGTCATGATAAGGCTGCAGACTGGTGGAGTGTGGGAATCCTATTATTCGAGATGCTCACTGGGAAGCCTCCATTTATTGGTGGGAATCGGCAGAAAATCCAGCAAAAGATAATAAAAGATAAGATCAAGCTTCCAGCCTTTTTGTCAAGTGATGCGCATTCTGTGTTGAAAGGGCTGCTACAAAAGGACCCAAGCAAGCGCCTGGGAAGTGGACCGTTGGGGATCGATGAAATCAAGCACCATAAGTGGTTCAAACCAATCAACTGGAGGAAGCTGGAGGCTCGTGAGATTCAGCCAAGTTTTCGTCCAGAAGTTGATGGAAAACTCTGCATTGCAAACTTTGAGAAGCGATGGACCGACATGCCATTGGCTGATTCTCCTGCTGCCAGCCCAAAAGCCAACGGAAATATCTTCACAGGCTTCACCTATGTAAGGCCTGCGGCCTCTTTTCTTCGAAGGAATAGCCCCTTGAATTAA 1470 0.4306 MVFSDVPGLTKTRMCKPIQNQLLFPMNPTDIVPLDHVELDFADVFGPLPVQTPSEMNPGDSGDSVSAADTNDLIYGDPVVIYSRSHSLVGPSTCLSQSLKLSKLALHEIEDSEELVECLHEEAVKELQRTSSSDDISEKSFEDIDSDSTTVETVGLEDFEVMKLVGQGAFGKVFQVRKRNTSEIYAMKVMRKDKIMEKDHAEYMKAERDILTKVDHPFIVQLRYSFQTKYRLYLVLDFVNGGHLFFQLYNHGLFREDLARIYAAEIVSAVSHLHANGIMHRDLKPENILLDADGHAMLTDFGLAKEFDENTRSNSMCGTVEYMSPEIFLGKGHDKAADWWSVGILLFEMLTGKPPFIGGNRQKIQQKIIKDKIKLPAFLSSDAHSVLKGLLQKDPSKRLGSGPLGIDEIKHHKWFKPINWRKLEAREIQPSFRPEVDGKLCIANFEKRWTDMPLADSPAASPKANGNIFTGFTYVRPAASFLRRNSPLN* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0461 489 CDD STKc_AGC 165 415 IPR045270 GO:0004674|GO:0005524
Vvi8g0461 489 FunFam Non-specific serine/threonine protein kinase 156 262 - -
Vvi8g0461 489 ProSitePatterns Protein kinases ATP-binding region signature. 165 188 IPR017441 GO:0005524
Vvi8g0461 489 Pfam Protein kinase domain 159 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0461 489 PANTHER RIBOSOMAL PROTEIN S6 KINASE 130 478 - -
Vvi8g0461 489 SUPERFAMILY Protein kinase-like (PK-like) 156 479 IPR011009 -
Vvi8g0461 489 ProSiteProfiles Protein kinase domain profile. 159 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0461 489 FunFam Non-specific serine/threonine protein kinase 239 434 - -
Vvi8g0461 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 278 290 IPR008271 GO:0004672|GO:0006468
Vvi8g0461 489 Gene3D Transferase(Phosphotransferase) domain 1 239 434 - -
Vvi8g0461 489 SMART pkinase_C_6 416 476 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi8g0461 489 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 484 IPR000961 GO:0004674|GO:0005524|GO:0006468
Vvi8g0461 489 Gene3D Phosphorylase Kinase; domain 1 156 457 - -
Vvi8g0461 489 SMART serkin_6 159 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0461 Vvi-Chr8 10899789 10902727 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0461 1 486 AGC Kinase Gene Family AT3G08720 66.667 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Vvi8g0461 Pkinase 2.5e-75 CL0016