Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0457 ATGGAGAGAGAGTTGGTGGAATTGTTCGAATCGGCGAAGAAAGCGGCGGATGCTGCCGCCACCGACGGAGTTTCGTCGAACGGACCGGAGGTGGGCCGGTGCGTGGATGCGTTGAAACAGCTGAAGAGTTTTCCGGTGACGTATGAGGCTCTTGCATCGACGCAGGTAGGGAAACGGCTTCGACATCTCACAAAACACCCTAAGGGGAAGATCCAGAGTCTGGCTTCTGACTTGCTTGAGATGTGGAAAAAGGTAGTCATTGATGAAACAAGAAATAAGAAAAATGGTGGCCTTGATAATAACGGTTCAGCAAAGGCCGAGGTTTCAAAGACAGAGACAGTCAAAGTTGAGATGGCTCATAAGGCAGGTGGGGTAAAGGTTGAGAAGGCTTCAAAGGTTGAAACTGTCAAGATTGAGAAATTTGATAGAGGCAGTTCAACAAAGCCTGGTAGTGTTTCTAGGTCAGAAACTATCAAGGTTGAGAAAAGGGTTGAAAATGTGGATGAAAGGAAACAATTTTCCAGTGTGAAGAAACCACCACAAGCATCTAATGGTCCTCCTAAGCTCACTGCAATGATCAAATGCAATGATGCCTTGCGTGACAAAGTTCGGGAGCTTCTGGCAGAAGCTCTGTTCAAAGTTGCTAGCGAGGCTGATGAGGACATAAAGGATGAGGTAAATGCATGTGATCCAATTCGAGTTGCTGTCTCAGTAGAATCTGTAATGTTTGAGAAGATGGGTCGATCCAATGGGACCCAGAAGTTTAAGTACAGATCCATAATGTTCAACATCAAGGATCCAAACAACCCAGATTTAAGGAGAAAAGTTCTTCTCGGAGAGGTGAAGCCAGACAGGCTTATCAATATGAGCCCAGAAGAAATGGCCAGTAATCAGAGGCAACGTGAAAATAGCCAAATCAAAGAGAAAGCTTTATTTGATTGTGAGCGTGGTGGCCCACCAAAGGCCACAACTGATCAGTTCAAGTGTGGTCGCTGTGGTCAGCGCAAGACCACTTATTATCAACTGCAGACGCGGAGTGCAGATGAACCAATGACAACCTTTGTAACATGTGTAAACTGCAACAACCATTGGAAGTTCTGTTAG 1104 0.4574 MERELVELFESAKKAADAAATDGVSSNGPEVGRCVDALKQLKSFPVTYEALASTQVGKRLRHLTKHPKGKIQSLASDLLEMWKKVVIDETRNKKNGGLDNNGSAKAEVSKTETVKVEMAHKAGGVKVEKASKVETVKIEKFDRGSSTKPGSVSRSETIKVEKRVENVDERKQFSSVKKPPQASNGPPKLTAMIKCNDALRDKVRELLAEALFKVASEADEDIKDEVNACDPIRVAVSVESVMFEKMGRSNGTQKFKYRSIMFNIKDPNNPDLRRKVLLGEVKPDRLINMSPEEMASNQRQRENSQIKEKALFDCERGGPPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0457 367 ProSiteProfiles TFIIS N-terminal domain profile. 10 89 IPR017923 -
Vvi8g0457 367 ProSiteProfiles TFIIS central domain profile. 199 322 IPR003618 GO:0006351
Vvi8g0457 367 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 23 367 - -
Vvi8g0457 367 SUPERFAMILY Zinc beta-ribbon 305 365 - -
Vvi8g0457 367 SMART TFS2_5 8 88 IPR003617 GO:0005634
Vvi8g0457 367 Pfam TFIIS helical bundle-like domain 37 86 IPR017923 -
Vvi8g0457 367 CDD TFIIS_I 24 86 - -
Vvi8g0457 367 Pfam Transcription factor S-II (TFIIS), central domain 196 313 IPR003618 GO:0006351
Vvi8g0457 367 PIRSF TFIIS 2 367 IPR035100 -
Vvi8g0457 367 Gene3D - 296 367 - -
Vvi8g0457 367 Pfam Transcription factor S-II (TFIIS) 327 365 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi8g0457 367 FunFam Probable Transcription elongation factor S-II 296 367 - -
Vvi8g0457 367 ProSitePatterns Zinc finger TFIIS-type signature. 329 364 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi8g0457 367 Gene3D - 180 295 IPR036575 GO:0006351
Vvi8g0457 367 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 27 97 IPR035441 -
Vvi8g0457 367 MobiDBLite consensus disorder prediction 169 189 - -
Vvi8g0457 367 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 98 IPR035441 -
Vvi8g0457 367 SMART Cys4_2 327 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi8g0457 367 SUPERFAMILY Elongation factor TFIIS domain 2 181 297 IPR036575 GO:0006351
Vvi8g0457 367 CDD Zn-ribbon_TFIIS 320 366 - -
Vvi8g0457 367 ProSiteProfiles Zinc finger TFIIS-type profile. 325 365 IPR001222 GO:0003676|GO:0006351|GO:0008270
Vvi8g0457 367 NCBIfam transcription elongation factor S-II 11 367 IPR006289 GO:0003676|GO:0005634|GO:0006368
Vvi8g0457 367 SMART mid_6 201 305 IPR003618 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0457 Vvi-Chr8 10866742 10869157 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vvi8g0457 TFIIS_M 1.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0457 K03145 - vvi:100263760 723.776