Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0455 ATGAGAGAAAGTAAGTTACGTGGCTTCATACTATTGAGCATTGGGAGTGGGTGTGATCATGCGCGTGAGATAAAAGCTCTTCCTCTTGATCTTCACTTGGTGAGTATGGAGAGGCACACAGACGCCACCATGAGCACAATGGAGTGCACCTGGTCGGAAAAGATCTCCGGCGATCGGAAAAGAGCCATCGACGAGCTGCTTCGAGGTCGCTCCTTCACCAAGCAGCTTCGCAGCGTCCTCCTCGGAGGGGATCAACAGGAGTCGGCCCAGGATCTTCTAGTGAAAATCTCGAGGTCATTCACCGATACTCTTTCTATATTGAATTCCGGCGAGTCCGACGAGGCCGTCTCACAGATTCCGGCGAGTGGTCAGCTGTATTCGCCGGGTTGGCATGGCCGGAGGTCGGAGGAATCTTGCGAGAGTGGTAAGAGTTCCACCAAGGATCGCAGGGGCTGTTACAAGCGAAGGAAGAATTCGCAATCTTGGATCAGAATCACCCCTAATTTTCACGATGACGGTTATGCCTGGCGAAAATACGGACAAAAAGTCATACTCAATGCTAAACATCAAAGAAGCTACTATAGGTGCACCCACAAGCATGACCAGGGCTGCATGGCAACCAAACAGGTTCAGATGACTGAAGAGGAGCCCCCAATGTACAAAACCACATACCACGGCCAGCACACATGCAAAAGCATGCTGAAGTCATCTCAGATTATGGTGGAAAATTCTACTGCAAGAGATTCTTCCATTCTGCTCAGCTTTGAATCAAACAATCAAGATGATAGCAACGCCTTTTTCTCATCATTCCCCTTGATAAAACAAGAGGAAGAGATCCCAAATGATGATCAGGAGGTGACCTACAATAACCATACCAATAACAACAACAAGAACAACAACTCCTCATCCTCTGATTATCTTCTGTCACTGGAGCTCACCACATTTGAATCCAATCTGGGGTCTGATCATGGTGATGTCCTTTCTGGGGTTAACTCTTCTTGTACGGACAGCACTCACAGTTTGGATGATATGATGATGGACTTTGATGATGTTCTTATCGGTTTTGAGTGTTAG 1074 0.4749 MRESKLRGFILLSIGSGCDHAREIKALPLDLHLVSMERHTDATMSTMECTWSEKISGDRKRAIDELLRGRSFTKQLRSVLLGGDQQESAQDLLVKISRSFTDTLSILNSGESDEAVSQIPASGQLYSPGWHGRRSEESCESGKSSTKDRRGCYKRRKNSQSWIRITPNFHDDGYAWRKYGQKVILNAKHQRSYYRCTHKHDQGCMATKQVQMTEEEPPMYKTTYHGQHTCKSMLKSSQIMVENSTARDSSILLSFESNNQDDSNAFFSSFPLIKQEEEIPNDDQEVTYNNHTNNNNKNNNSSSSDYLLSLELTTFESNLGSDHGDVLSGVNSSCTDSTHSLDDMMMDFDDVLIGFEC* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0455 357 ProSiteProfiles WRKY domain profile. 165 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g0455 357 SUPERFAMILY WRKY DNA-binding domain 163 231 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi8g0455 357 Gene3D WRKY domain 152 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi8g0455 357 Pfam WRKY DNA -binding domain 171 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g0455 357 SMART WRKY_cls 170 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g0455 357 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Vvi8g0455 357 MobiDBLite consensus disorder prediction 133 148 - -
Vvi8g0455 357 MobiDBLite consensus disorder prediction 122 151 - -
Vvi8g0455 357 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 65 291 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0455 Vvi-Chr8 10843901 10846082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0455 61 232 WRKY Transcription Factor Family AT3G56400 41.143 3.25e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi8g0455 WRKY 1.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0455 - - vvi:100255013 615.15