Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0450 ATGTGTCCATGGCTTTCTGAGGTTGGTGTCATAGGCTTTCATGGAGGAGTAGCGTTTTTCAGGCTTGAGTGGAGAGGGAAAATGGTGGTGACACTTTTTGCTGTTCTGTTTATAGTTCCTGTTGTTTTGGGATCTCTGGACCCGGGCTTCAACGACGACGTTTTGGGGTTGATTGTGTTCAAGGCTGGCCTCCAAGATCCGGAGTCGAAGCTCATATCTTGGAATGAAGACGATAACAACCCCTGCAACTGGGCCGGTGTGAAATGCGATCGCCAGACCAACCGTGTTTCGGAGCTCCTCCTTGACAACTTCTCTCTTTCGGGTCGGATTGGTAGAGGCCTTTTGCGGCTGCAATTCCTTCGGATATTGTCGTTGTCGAAGAACAACTTCACTGGGACTATAAACCCCAGTCTCGCGCGCATTGCAAGCCTTCGAGTTATTGACTTGAGTGAGAACAACCTCTCTGGACCAATACCAGACGAGTTTTTTCGACAATGTGGGTCGCTAATCGTTGTTTCGCTTGCTGGGAACAAGCTTTCAGGGCAGATCCCAGATACGTTGAGCTTATGCAAGACACTGAGGGGAGTGAACTTCTCCTCTAATCAGCTTTCTGGGCAATTGCCCGATGGAATCTGGTCTTTGTATGGGCTAAGATCGCTTGATTTATCCAATAATTTTCTGGAGGGTGAGATCCCAGAAGGAATTGGAAGTTTGTATAGTCTAAGAGCAATTAATTTGGGGAAGAACAAGTTCTCAGGCCGCATCCCAGACAGCATTGGAAGTTGTTTGCTTTTGAGATTGCTTGATTTGAGTGAAAATTTATTTTCCGGGGGGCTTCCAGAGTCGATGCAGAGACTTAGAATGTGCAATTATCTTAGTTTACGGGGTAATTTGTTGACGGGAGAAGTTCCTGCTTGGATTTGGGGGATGAGAAACCTTGGGACTCTGGATCTTTCTGCGAATGTATTTTCGGGTCAGATTCCAAATTCAATTGGAAACCTTTTATTGTTGAAGGAACTAAATTTATCCTCTAATCAGTTCGGTGGAAGTTTGCCAGAGTCTATGACAAAATGCACTAACCTTGTGGCTATGGATGTTAGCCACAACTTGTTGACAGGTAATCTTCCCGCCTGGATTTTTAGTTTGGGTTTACAAACTATTTCACTTGCGGGGAACAAACTCAATGGAAGTGTAGAATATTCTCCTCTAACGTCAATGGCTGCCTCTTATCAAAGACTTCAGGTTTTGGATTTATCATCAAATGCCTTATCTGGTGAAATTTTATCCGGGATTGCGGCTTTTAGTAGTTTGCAGTTCTTGAATATGTCGAGAAACTCTCTGATTGGTTCTATTCCAGAAAGCATAGGTGAATTAAAAACTTTACATGTCCTTGATTTGAGCAACAATCAGCTAAATGGAAGCATTCCTTTTGAAATCAGAGGTGCAGTTTTGCTGAAGGAACTAAAGCTGGAGAAGAACTTTCTTACTGGGAAAATTCCAACCCAGATTGAGAAGTGCAAGTCACTGACCTCTTTGATCTTATCTCAGAACCACCTCACAGGTCCAATCCCTGCAGCCATTGCTAACCTCACCAGCATTGAAAATGTGGACTTGTCATTTAACAATCTCTCAGGAAGTTTACCAAAGGAGCTAACAAATCTCTCCCACCTCCTATCCTTCAATATCTCTCATAACAACATCCAAGGTGAATTGCCATCCGGTGGCTTCTTCAACACCATCTCCCCATCATCTGTCTCTGGTAATCCATCCCTTTGTGGCTCTGTTGTGAACCGCTCCTGCCCTTCTGTCCATCCCAAACCCATTGTCCTTAATCCTGATTCTTCTTCCAACTCCTCTAATGCCGGCTCTTTCCCTTCAAATCGCCGTCACAAGATTATACTCAGCATCTCTGCTCTCATTGCCATTGGTGCAGCCATTTTCATTGCAGTTGGTGTTTTAGCGATCACTATCCTCAACATCCATGCCCGGTCATCTATGTCTCATGCTGCTGCCAGCCCAATATTATCTGGTGGGGATGATTTTAGTCATTCCCCCACTAATGATGCTCAGTATGGCAAGCTTGTCATGTTCTCTGGTGATGCTGACTTTGTTGCTGGGGCACATGCATTACTCAACAAGGATTGTGAACTCGGTCGTGGTGGGTTTGGAGCTGTTTATCGAACAATCCTTCGAGATGGGCGTTCAGTTGCTATCAAGAAGTTGACTGTTTCAAGTTTGATCAAGTCCCAAGAAGATTTTGAGAGGGAAGTGAAAAACCTTGGAAAGATCAGGCACCATAATCTAGTGGCACTCGAAGGGTATTACTGGACTTCATCCTTACAGCTGCTCATTTATGAATACATCTCCAGTGGGAGTTTGTATAAACATCTCCATGAGGTTCCAGGCAAAAGCTGCCTCTCTTGGCGAGAGAGGTTTAACATAGTTCTTGGGACCGCAAAAGGTTTGGCCCATTTGCACCAGCTGAACATAATTCACTATAATCTCAAATCCACTAATATTCTGATAGACAGTGGTGGTGAACCCAAGGTGGGAGACTTTGCCTTGGCAAGGCTGTTACCAATGTTAGACCGCTATGTTCTAAGCAGCAAGATTCAGAGTGCACTTGGATACATGGCACCTGAATTTGCATGTCGAACAGTGAAAATAACCGAGAAATGCGATGTGTATGGGTTTGGTGTCTTGGTTCTGGAGGTAGTGACCGGGCGGAGACCTGTGGAATACATGGAGGATGATGTGGTTGTCCTTTGTGACATGGTGAGGGGAGCACTTGATGAAGGTAAGGTGGAAGAATGTGTTGACAGGAGGCTCCAGGGGGAATTTCCAGCAGATGAGGCTATTCCAGTGATAAAACTTGGGCTGATATGTGCATCTCAGGTGCCATCAAATCGGCCAGACATGGGAGAAGTGGTGAACATTTTAGAACTGATCCAATGCCCGTCAGAAGGCCAAGCATTAGAATGA 2982 0.45 MCPWLSEVGVIGFHGGVAFFRLEWRGKMVVTLFAVLFIVPVVLGSLDPGFNDDVLGLIVFKAGLQDPESKLISWNEDDNNPCNWAGVKCDRQTNRVSELLLDNFSLSGRIGRGLLRLQFLRILSLSKNNFTGTINPSLARIASLRVIDLSENNLSGPIPDEFFRQCGSLIVVSLAGNKLSGQIPDTLSLCKTLRGVNFSSNQLSGQLPDGIWSLYGLRSLDLSNNFLEGEIPEGIGSLYSLRAINLGKNKFSGRIPDSIGSCLLLRLLDLSENLFSGGLPESMQRLRMCNYLSLRGNLLTGEVPAWIWGMRNLGTLDLSANVFSGQIPNSIGNLLLLKELNLSSNQFGGSLPESMTKCTNLVAMDVSHNLLTGNLPAWIFSLGLQTISLAGNKLNGSVEYSPLTSMAASYQRLQVLDLSSNALSGEILSGIAAFSSLQFLNMSRNSLIGSIPESIGELKTLHVLDLSNNQLNGSIPFEIRGAVLLKELKLEKNFLTGKIPTQIEKCKSLTSLILSQNHLTGPIPAAIANLTSIENVDLSFNNLSGSLPKELTNLSHLLSFNISHNNIQGELPSGGFFNTISPSSVSGNPSLCGSVVNRSCPSVHPKPIVLNPDSSSNSSNAGSFPSNRRHKIILSISALIAIGAAIFIAVGVLAITILNIHARSSMSHAAASPILSGGDDFSHSPTNDAQYGKLVMFSGDADFVAGAHALLNKDCELGRGGFGAVYRTILRDGRSVAIKKLTVSSLIKSQEDFEREVKNLGKIRHHNLVALEGYYWTSSLQLLIYEYISSGSLYKHLHEVPGKSCLSWRERFNIVLGTAKGLAHLHQLNIIHYNLKSTNILIDSGGEPKVGDFALARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGVLVLEVVTGRRPVEYMEDDVVVLCDMVRGALDEGKVEECVDRRLQGEFPADEAIPVIKLGLICASQVPSNRPDMGEVVNILELIQCPSEGQALE* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0450 993 SUPERFAMILY RNI-like 196 570 - -
Vvi8g0450 993 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515
Vvi8g0450 993 Pfam Leucine Rich Repeat 436 458 IPR001611 GO:0005515
Vvi8g0450 993 FunFam Inactive leucine-rich repeat receptor-like protein kinase 212 305 - -
Vvi8g0450 993 Pfam Protein tyrosine and serine/threonine kinase 713 979 IPR001245 GO:0004672|GO:0006468
Vvi8g0450 993 ProSiteProfiles Protein kinase domain profile. 711 983 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0450 993 Pfam Leucine rich repeat N-terminal domain 51 90 IPR013210 -
Vvi8g0450 993 Gene3D Ribonuclease Inhibitor 312 603 IPR032675 -
Vvi8g0450 993 PRINTS Leucine-rich repeat signature 413 426 - -
Vvi8g0450 993 PRINTS Leucine-rich repeat signature 458 471 - -
Vvi8g0450 993 Gene3D Transferase(Phosphotransferase) domain 1 788 990 - -
Vvi8g0450 993 SMART LRR_typ_2 334 358 IPR003591 -
Vvi8g0450 993 SMART LRR_typ_2 434 458 IPR003591 -
Vvi8g0450 993 SMART LRR_typ_2 141 165 IPR003591 -
Vvi8g0450 993 SMART LRR_typ_2 214 238 IPR003591 -
Vvi8g0450 993 SMART LRR_typ_2 554 578 IPR003591 -
Vvi8g0450 993 SMART LRR_typ_2 530 553 IPR003591 -
Vvi8g0450 993 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 50 211 - -
Vvi8g0450 993 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 788 989 - -
Vvi8g0450 993 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 330 604 - -
Vvi8g0450 993 Pfam Leucine rich repeat 485 543 IPR001611 GO:0005515
Vvi8g0450 993 ProSitePatterns Protein kinases ATP-binding region signature. 717 740 IPR017441 GO:0005524
Vvi8g0450 993 Gene3D Ribonuclease Inhibitor 51 208 IPR032675 -
Vvi8g0450 993 Gene3D Ribonuclease Inhibitor 209 307 IPR032675 -
Vvi8g0450 993 CDD STKc_IRAK 717 983 - -
Vvi8g0450 993 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 215 334 IPR046959 -
Vvi8g0450 993 Pfam Leucine Rich repeat 412 432 IPR001611 GO:0005515
Vvi8g0450 993 SUPERFAMILY Protein kinase-like (PK-like) 714 986 IPR011009 -
Vvi8g0450 993 Gene3D Phosphorylase Kinase; domain 1 689 787 - -
Vvi8g0450 993 SUPERFAMILY L domain-like 67 259 - -
Vvi8g0450 993 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 705 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0450 Vvi-Chr8 10799693 10803461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0450 28 987 Receptor kinase-like Gene Family AT3G56370 64.627 0.0 1198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vvi8g0450 PK_Tyr_Ser-Thr 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0450 - - vvi:100248331 1889.39